LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g1058	ATGGCAAGACCAGCTCCACCCGTAACTCCGATGTGTCCACCCAACTCCAATTCAAACACAACGCACCCACTCTCTCTACTACCCAAATGCACCTCTCTTAGAGAGCTCAAGCAACTCCAAGCCTTCGCCATCAAAACCCACCTCCACAGTGACCTCTCTGTCCTCACCAAGTTCATCAACTTCTGCAGCCTCAACCCTACGACTACCTCTATGCAACACGCCCACCACCTGTTTGATCAAATTCCCCAACCAGACATTGTCCTCTTTAACACCATGGCTCGCGGCTACGCCCGCACTGATACCCCTCTTCGAGCATTTACCCTTTTCACTCAAATTCTTTTTTCTGGCCTCTTCCCTGATGATTACACATTCCCGTCTCTTCTCAAGGCATGTGCCAGCTGCAAAGCCTTGGAAGAAGGCAGACAGTTGCACTGTCTTGCTATCAAACTTGGGCTAAGTGAAAATGTTTACGTGTGTCCTACGCTTATAAATATGTATACTGCGTGCAATGAGATGGATTGCGCTCGGAGGGTATTTGATAAGATATGGGAACCGTGTGTTGTTACTTACAATGCGATGATCACGGGTTATGCTCGGGGGAGTAGGCCTAATGAGGCCTTGTCATTGTTTCGAGAATTGCAAGCCAGAAATCTCAAGCCTACTGATGTTACTATGCTTAGTGTTCTTTCCTCTTGTGCTTTGTTAGGAGCTTTAGACTTGGGGAAGTGGATGCATGAGTATGTTAAGAAGAATGGGTTCAATCGATTTGTGAAGGTGGACACTGCACTAATAGACATGTATGCAAAATGTGGGAGTTTGGATGATGCGGTTTGTGTATTCGAGAATATGGCTGTAAGAGATACGCAGGCCTGGTCAGCAATGATTATGGCATATGCAATTCATGGGCATGGTCTTAAGGCAGTATCTCTGTTTAAAGAAATGAGAAAAGCTGGAACCGAACCTGATGAGATCACATTTTTGGGTCTTTTGTATGCCTGCAGCCATACTGGATTGGTAGAGGAGGGTTTTGAGTACTTCTATGGTATGAGGGACAAGTATGGGGTTATTCCTGGGATCAAGCATTACGGGTGTATGGTGGATTTGCTAGGTCGAGCTGGACGCTTGGAGGAGGCCTATGAGTTCATTGTGGGGTTGCCAATTAGGCCCACGCCCATACTCTGGCGAACCTTGTTATCTGCTTGTGGTAGTCATGGTAATGTAGAATTGGGGAAGCGGGTGATTGAGCAGATTTTTGAACTAGATGACTCTCATGGCGGGGATTACATAATCTTATCAAACTTGTGTGCCAGAGCTGGAAGATGGGAAGATGTGAATTATGTGAGGAAACTGATGAACGAAAGAGGGGTGGTAAAGATTCCGGGGTGTAGCTCAGTAGAGGTGAACAATGTAGTACATGAGTTCTTCTCTGGGGATGGGGTGCATTCTGTTTCTACGAAGTTACACCAGGCACTTGATGAATTGGTTAAGGAATTGAAGTTGGTTGGGTACGTCCCCAATACTTCTCTAGTCTTTCATGCAGACATGGAAGATGAAGAGAAGGAAGTAACTCTTAGATATCATAGTGAAAAGTTGGCCATTACTTTTGGGCTCCTAAACACTCCCCCAGGGACAACAATTCGTGTTGTGAAGAACCTTCGGGTCTGTGGGGATTGCCATTCTGCTGCTAAACTTATATCATTGATCTTTGATAGACAGATAATTCTCAGAGATGTCCAAAGATTCCATCATTTCAAAGATGGTAAGTGCTCTTGTGAAGATTATTGGTAG	1788	0.4536	MARPAPPVTPMCPPNSNSNTTHPLSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW*	596

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g1058	595	Pfam	PPR repeat family	287	333	IPR002885	-
	Vvi1g1058	595	Pfam	PPR repeat family	185	232	IPR002885	-
	Vvi1g1058	595	Pfam	PPR repeat family	84	132	IPR002885	-
	Vvi1g1058	595	NCBIfam	pentatricopeptide repeat	290	323	IPR002885	-
	Vvi1g1058	595	NCBIfam	pentatricopeptide repeat	188	221	IPR002885	-
	Vvi1g1058	595	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	186	220	IPR002885	-
	Vvi1g1058	595	MobiDBLite	consensus disorder prediction	1	20	-	-
	Vvi1g1058	595	FunFam	Pentatricopeptide repeat-containing protein chloroplastic	260	511	-	-
	Vvi1g1058	595	FunFam	Pentatricopeptide repeat-containing protein chloroplastic	98	251	-	-
	Vvi1g1058	595	Pfam	PPR repeat	362	381	IPR002885	-
	Vvi1g1058	595	Pfam	PPR repeat	261	284	IPR002885	-
	Vvi1g1058	595	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	85	119	IPR002885	-
	Vvi1g1058	595	Gene3D	Tetratricopeptide repeat domain	102	259	IPR011990	GO:0005515
	Vvi1g1058	595	Gene3D	Tetratricopeptide repeat domain	260	503	IPR011990	GO:0005515
	Vvi1g1058	595	Pfam	E motif	404	466	IPR046848	-
	Vvi1g1058	595	Pfam	DYW family of nucleic acid deaminases	502	595	IPR032867	GO:0008270
	Vvi1g1058	595	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	287	321	IPR002885	-
	Vvi1g1058	595	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	187	532	IPR046960	GO:0003723\|GO:0009451

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g1058	Vvi-Chr1	12128655	12130442	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g1058	25	595	Glycoside Hydrolase	AT3G49170	38.966	8.14e-141	428

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi1g1058	-		-	vvi:100261911	1223.76