Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1055 ATGCCAAACAGAATTAAATTTGTACTTCTCACCCTCAACGCAATAATATCGCCAAGTTGGTATGATGTGGAAGCCTATGAGTGGTTCTTACATGATAACGAGTGTGTGTTCCTAAAGCATTACAGAAACCGCTTATATCGCTTGCATTATCATATCCTATCAACATTACCCCACTGTTGTACCGCTGCAACAAGAAGGAGAACAACAATGGCAACAATAGCTGGTGTTAGTCTCTCAACCCCAAGAGTTTTGGCTAGGGCTGCAGACTCACCAAAGTCCCAGACCATTCAATCACCATGGCTGAGCAACCCCTGGAAAAGGCCAAGCCGGTTTGGAGCTGGTCGCATGTGTGTCAGGCCAGTGGCTGCAGCACCAGATAGCATATCCGAGAAGGTGGTTGAGAGCATCAAGAATGCTGAAGAGAAGTGCTCAGACGATCCAGCTAGCGGGGAGTGTGTAGCTGCCTGGGATGAGGTAGAGGAGCTGAGCGCGGCTGCCAGCCATGCCAGGGACAAGAAGAAGGAATCCGACCCATTGGAGACTTACTGTAAGGATAATCCTGAGGACGAGGAGTGCCGCACCTATGAAGACTGA 594 0.4933 MPNRIKFVLLTLNAIISPSWYDVEAYEWFLHDNECVFLKHYRNRLYRLHYHILSTLPHCCTAATRRRTTMATIAGVSLSTPRVLARAADSPKSQTIQSPWLSNPWKRPSRFGAGRMCVRPVAAAPDSISEKVVESIKNAEEKCSDDPASGECVAAWDEVEELSAAASHARDKKKESDPLETYCKDNPEDEECRTYED* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1055 197 PANTHER CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC 74 197 IPR039314 -
Vvi1g1055 197 Pfam CP12 domain 128 196 - -
Vvi1g1055 197 MobiDBLite consensus disorder prediction 166 197 - -
Vvi1g1055 197 SMART CP12_2 128 197 IPR003823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1055 Vvi-Chr1 12080562 12081982 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1055 - - vvi:100267103 264.233