Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1050 ATGCCGGAGAGATTGGACTTGACGTGCCATGTGTGCGGCAGTGTCGGCTTCAGCGACGGTGCTGACGGTTTCTTCTACTGCGGCCGCTGCGGCTCTCAAGCCGAGGACATCATCGACACCGGCGTCGCCGAGGAGGACTTCGTCGCCAAGGGTGACGCGCGTGGCGCCATCTACTCCGCCAGTCACCGCCGCCAGAGGCACTCCATCGCCCCCAAACCCGAGCCACTGTCTCAGTCCCAATCCCAATTCTTGAACAACCTAACCCTAGACGACGATTACCGGGTAGAAAACGAGGAAACTAGAGAAGAGACCGTGGCAGATGAGGTGGGTCCGTCAGGACCCTCTGATTTTGGGCTGGGTTTGGATGGTTCTGATGGGCTGAGTTTCGAAGATTATTACACGCAACTTAGGATTAGGTATGTAATGGGGGTTCAGATAATGATTGAGTTGCAGTGTCAGGCTTTGGTGGAGAAATTCAAGGCGAGTCCATTGATTTGTGGAGTTGCCGGAACAATTTGGCTGCGATTCGTGGCGACTACTAGGGTTTTTGATGATGAGTGGGCTGATAAAGTTATTCAAGATTCAGAGATGCAGAAACCAGGGGAATCAGAAGATCTAAAGCCTCGGGCTAAATATAGTGCAGAACCTCATAATATATATGGTCAGCGAGCTGTCATCATATGGCATAGATCTTTGAAAAAAAAAATACCCTTATCTTGTTCTCTGGTAATTTCTTTTCTAGCCTGTCACATTGCCAGGGAGGCAATCCTGCCAACAGACATATTAAAGTGGTCTCTTGAAGGGAAGCTTCCATATTTTGCTGCATTCATTGAAATTGAAAAGCAGATTGGGCCTCCATCAAGCCCTTGTCCTTTGAGTTCAAGTTTTATGTTTAGACCTTCTGAAGCCATTCCATTACAGAAGTTGGAAGCTCAGGCAGCGTCTATTGCTGACTTTATAGGCTTGCATTTACCTCCTGTGAATTTCTATGCAATTGCTTTTCGCTATCTGGAGCAGTTATTTCTTCCTGTTGAAAAGATACTTCCATATGCTTGCCGTGTATATGAGTGGTCAATGCCTCCTGACTTGTGGTTATCAGCAAATGAATTAAGGCTTCCTACTCGGGTTTGTGTTATGTCAATTCTAATTGTAACAATAAGGATTCTTTACAACGTACATGGTTTTGGGAAATGGGAAATGAGTTTGTCTAGTTCCAGTGGTTCTTCATCCTCATCTAGTCAGATAGTAAAATTGAATGCCTCAGACAATATTAAAATGATGGATGGTGCTAAACAAGGTTCTCCTTTACATGATTTGAATGGTTCAAACGAAGAACCTGTGACAAACTCATCTCATGCCCAGAAATCTGAATTTGATGCTACAGAGCTTTTGTGTAACCTTGATGCCAGATATGATGAACTCATTGACACCTATGAGTATTCCAAGGATTTACCGACATATCTGCAATACTGTAAGGATGTTGTCTTTGCCGGACTGGAACTGCCATTTGAGGATCACGAGGAGGAGAAGATAATAGAACAGTTATGGGAATTTTATCAAAATCAAAAGGATTCTGAACCCTCAGAAGACCTTGGAGTGGAATGTGGTAGTGCTTTGAATGAAAAAAGATCTAGGAATGATGAAGGATGCATTAACAGCATTCCCAAGGAAAAGAAGAAAATTAGAGATGATTGCTCTGTACCACTGGGTCTGGACGGTGATGATACTTCTTTGAATTCACAGGGAGGTCAAAAGTCAGTACCCACCCATCAAGCTTCAGTAGAGACACTCAAAGAAGAAGCCATTTTACGGATGAAAGCGGACATGGAGGAAAATAGGTTCTGTTATATTCCACCTAGGGTCAATGTCAAGAGATTCGATTACCTTCACTATGTGAGAAAGAAGGATGAAGGTTCCTATATTTATGCTGCCCATGCAGATTATTACATATTGCTTCGTGCTTGTGCAAGGGTTGCTCAAGTTGATGTACGGAGTATGCATGTTGGAGTGATGAGTCTTGAGAGGAGACTGGGTTGGATCGAGAAAAGAATTGATCATTGCTTGCATTTCAAACCTCCAAAATTTTCCTCTGACCCATGTAATGATGATGCACCAGAATGTTCTACAGATGATTATGTTGAATTTTCAAGTTTGAATTTATCACCTTAA 2169 0.4348 MPERLDLTCHVCGSVGFSDGADGFFYCGRCGSQAEDIIDTGVAEEDFVAKGDARGAIYSASHRRQRHSIAPKPEPLSQSQSQFLNNLTLDDDYRVENEETREETVADEVGPSGPSDFGLGLDGSDGLSFEDYYTQLRIRYVMGVQIMIELQCQALVEKFKASPLICGVAGTIWLRFVATTRVFDDEWADKVIQDSEMQKPGESEDLKPRAKYSAEPHNIYGQRAVIIWHRSLKKKIPLSCSLVISFLACHIAREAILPTDILKWSLEGKLPYFAAFIEIEKQIGPPSSPCPLSSSFMFRPSEAIPLQKLEAQAASIADFIGLHLPPVNFYAIAFRYLEQLFLPVEKILPYACRVYEWSMPPDLWLSANELRLPTRVCVMSILIVTIRILYNVHGFGKWEMSLSSSSGSSSSSSQIVKLNASDNIKMMDGAKQGSPLHDLNGSNEEPVTNSSHAQKSEFDATELLCNLDARYDELIDTYEYSKDLPTYLQYCKDVVFAGLELPFEDHEEEKIIEQLWEFYQNQKDSEPSEDLGVECGSALNEKRSRNDEGCINSIPKEKKKIRDDCSVPLGLDGDDTSLNSQGGQKSVPTHQASVETLKEEAILRMKADMEENRFCYIPPRVNVKRFDYLHYVRKKDEGSYIYAAHADYYILLRACARVAQVDVRSMHVGVMSLERRLGWIEKRIDHCLHFKPPKFSSDPCNDDAPECSTDDYVEFSSLNLSP* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1050 722 PANTHER TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT B 1 700 IPR033599 GO:0001164|GO:0001188|GO:0006360|GO:0070860
Vvi1g1050 722 Pfam Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 8 35 IPR021752 -
Vvi1g1050 722 MobiDBLite consensus disorder prediction 436 453 - -
Vvi1g1050 722 MobiDBLite consensus disorder prediction 573 592 - -
Vvi1g1050 722 MobiDBLite consensus disorder prediction 434 453 - -
Vvi1g1050 722 MobiDBLite consensus disorder prediction 572 592 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1050 - - vvi:100241425 1424.84