Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1044 ATGAATATGTATAACCTATTAATGGAGAGGCACATGAGAAGTGCGGTGGTTATCTTGCTTTGGTTTCTCTTTCAAGGGAACACTGAAGTTAGTTTTTGTGCTGGGAATCCAAGTCGTGTTATTTGCAGAGGAAGAGAAAAACGAGCCCTCCTGAGCTTCAGAAGCCATGTTGCTCCTTCAAACCGGCTCTCATCTTGGACGGGTGAAGAGTGCTGTGTGTGGGACCGAGTTGGCTGTGACAACATCACAGGGCATGTTGTCAAGCTCAACCTTCGGTACTCGGATGATCTTTCTGTACTTGGAGAGAATAAATTGTATGGAGAGATAAGTAATTCCTTGCTGGACTTGAAACATCTTCGTTGCTTGGACCTGAGCAGCAATTACTTTGGAGGATCTCAAATTCCACAATTTTTTGCTTCACTGGCGACACTGAGATATCTTAACCTCTCTAAAGCAGGTTTTGCTGGTCCCATTCCTACACAGCTTGGAAATTTATCCAACTTGCAGCATCTTGACATCAAAGGTAATAGTCTGAATGTTGAGGATCTTGAATGGGTTGGTAATCTCACTTCCTTACAAGTCCTTGACATGAGCGGAGTGAAAATACGCAAGGCTGCAAACTGGCTTGAGGTAATGAATAAGCTCCCTTCTTTATCACTTCTACACTTGTCTGGTTGTGGACTTGCTACCATTGCTCCTCTTCCGCATGTTAATTTTTCATCTCTACACAGCCTTGACCTTTCAAAAAACAGCTTTACTTCTTCAAGGTTTAATTGGTTTTCAAGTCTTAGTTCTCTCGTGATGCTTAATTTAAGCTCCAACAGCATTCATGGTCCGATTCCAGTAGGTCTTCGCAACATGACTTCTCTTGTATTCCTAGATCTTTCCTACAACAGCTTCTCTTCTACTATTCCATATTGGTTGTGTATCTCTAGCCTTCAAAAAATCAACCTGTCGTCCAACAAGTTTCATGGTAGGCTTCCGAGTAACATTGGGAACCTCACTTCAGTTGTACATCTTGACTTGTCATGGAATTCATTCCATGGTCCAATTCCTGCTTCATTAGGAGAATTGTTATCCTTGCGTTTTTTGGATATTTCTGAGAACCTTTTCATAGGTGTTGTGTCTGAAAAGCACCTTACCAATCTAAAATATTTGAAAGAGTTAATTGCATCTTCAAATTCACTAACTTTGCAAGTGAGCTCTAATTGGACTCCTCCCTTCCAGCTCACCTCAGTAAATTTTAGTTTTTGCCTCTTAGGCCCTCAATTTCCTGCATGGCTTCAAACACAAAAATATTTGAAAATTCTGGACATGTCCAAAACAGGAATCTCAGATGTCATCCCCGCATGGTTCTGGATGCTACCCCATATTGATGTTATAAATCTATCTGACAATCAGATTAGTGGCAACATGCCAAAGAGTTTACCTTTGTCATCCAGGATCAATCTTGGTTCAAACAGGTTGGCAGGCCCATTGCCCCAAATTTCTCCTAGTATGTTGGAATTATCTCTTTCCAATAACTCATTTAATGGATCTCTTTCACCCACTGTGTGTAGAAGGATTGATGGAGTATATTCATTGACATTCTTAGATCTTTCAGGAAATCTTCTAGAGGGAGAACTTCCTGATTGTTGGAGCTACTGGACAAAATTGTTGGTGTTAAAATTGGGGTATAATAATTTGACCGGAAACATTCCTAGCTCCATGGGCAATTTAATTTCACTCGGGTCATTGCACTTGCGCAACAACCATCTTTCTGGAGTTCTACCGACTTCGTTGCAGAACTGCAAAAATTTGGTTGTTTTGGATCTTAGTGAGAATCAATTCACTGGGAGCTTACCAAGATGGATTGGGAAACTTGGCGAGAAGTATTTAACAGGGTACACCATATTCCGCCTGAGGATTCTTGCCCTTCGATCAAATAAGTTCGATGGAAATATTCCTCAAGAATTCTGCCGTCTGGAATCCCTTCAAATCTTGGACCTTGCAGACAATAATATCTCGGGATCCATTCCGAGATGCTTTGGCAGTCTCCTAGCCATGGCATACCCATATTCAGAAGAGCCCTTTTTTCATAGTGATTATTGGACCGCAGAATTCAGGGAAGCAATGGTTCTTGTGATAAAAGGAAGAAAATTAGTTTACAGTCGTACCCTTCCCTTTGTAGTCAGCATGGATCTCTCCTACAATAACTTATCAGGCAATATGCCTGAAGAACTAACAAGTCTCCATGGTTTGGTATCCTTGAACCTGTCTCAAAATCATCTCGAAGGAAATATTCCCCATGAGATTAGACTCTTGCAAGAATTGATGAGTCTTGATCTCTCTATGAACAAACTTTCTGGTGTTATTCCTCAAAGCATGGAAAGTATGCTGTTCTTGAGTTTCTTAAATTTATCATACAATGATTTCTCCGGTAGAATTCCATCCAGATGCCAAATGTCGACCTTTGACACAGACAGTTACATTGGCAATCATAAGCTCTGTGGGTCTCCACTTCCAGATGCTTGTGCTGGAGACTATGCACCGGAAGGTCCAATAATGGCTGATGAAGACCGTACTTGTGGTAGAGGTGATGAACTGATAGAAAATCATGGTTTTCACGAAGATAAGGATGGATGGATCGATATGAAGTGGTTTTATATGGGCATGCCACTAGGATTCGTGGTGGGTTTTTGGGCAGTTTTTGGCCCATTAGCATTCAACAGGGCTTGGAGGCATGCGTTTTTTGGGTTCTTAGATGACATTAAATACAAACTGTTGGGATTGTGA 2775 0.4123 MNMYNLLMERHMRSAVVILLWFLFQGNTEVSFCAGNPSRVICRGREKRALLSFRSHVAPSNRLSSWTGEECCVWDRVGCDNITGHVVKLNLRYSDDLSVLGENKLYGEISNSLLDLKHLRCLDLSSNYFGGSQIPQFFASLATLRYLNLSKAGFAGPIPTQLGNLSNLQHLDIKGNSLNVEDLEWVGNLTSLQVLDMSGVKIRKAANWLEVMNKLPSLSLLHLSGCGLATIAPLPHVNFSSLHSLDLSKNSFTSSRFNWFSSLSSLVMLNLSSNSIHGPIPVGLRNMTSLVFLDLSYNSFSSTIPYWLCISSLQKINLSSNKFHGRLPSNIGNLTSVVHLDLSWNSFHGPIPASLGELLSLRFLDISENLFIGVVSEKHLTNLKYLKELIASSNSLTLQVSSNWTPPFQLTSVNFSFCLLGPQFPAWLQTQKYLKILDMSKTGISDVIPAWFWMLPHIDVINLSDNQISGNMPKSLPLSSRINLGSNRLAGPLPQISPSMLELSLSNNSFNGSLSPTVCRRIDGVYSLTFLDLSGNLLEGELPDCWSYWTKLLVLKLGYNNLTGNIPSSMGNLISLGSLHLRNNHLSGVLPTSLQNCKNLVVLDLSENQFTGSLPRWIGKLGEKYLTGYTIFRLRILALRSNKFDGNIPQEFCRLESLQILDLADNNISGSIPRCFGSLLAMAYPYSEEPFFHSDYWTAEFREAMVLVIKGRKLVYSRTLPFVVSMDLSYNNLSGNMPEELTSLHGLVSLNLSQNHLEGNIPHEIRLLQELMSLDLSMNKLSGVIPQSMESMLFLSFLNLSYNDFSGRIPSRCQMSTFDTDSYIGNHKLCGSPLPDACAGDYAPEGPIMADEDRTCGRGDELIENHGFHEDKDGWIDMKWFYMGMPLGFVVGFWAVFGPLAFNRAWRHAFFGFLDDIKYKLLGL* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1044 924 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 519 614 - -
Vvi1g1044 924 SMART LRR_typ_2 263 286 IPR003591 -
Vvi1g1044 924 SMART LRR_typ_2 597 621 IPR003591 -
Vvi1g1044 924 SMART LRR_typ_2 744 767 IPR003591 -
Vvi1g1044 924 SMART LRR_typ_2 768 791 IPR003591 -
Vvi1g1044 924 SMART LRR_typ_2 334 358 IPR003591 -
Vvi1g1044 924 SMART LRR_typ_2 655 678 IPR003591 -
Vvi1g1044 924 SMART LRR_typ_2 215 236 IPR003591 -
Vvi1g1044 924 SMART LRR_typ_2 116 140 IPR003591 -
Vvi1g1044 924 SMART LRR_typ_2 525 549 IPR003591 -
Vvi1g1044 924 SMART LRR_typ_2 239 262 IPR003591 -
Vvi1g1044 924 SMART LRR_typ_2 287 311 IPR003591 -
Vvi1g1044 924 SMART LRR_typ_2 573 596 IPR003591 -
Vvi1g1044 924 Pfam Leucine Rich Repeat 657 679 IPR001611 GO:0005515
Vvi1g1044 924 Gene3D Ribonuclease Inhibitor 209 308 IPR032675 -
Vvi1g1044 924 Gene3D Ribonuclease Inhibitor 43 208 IPR032675 -
Vvi1g1044 924 Gene3D Ribonuclease Inhibitor 404 498 IPR032675 -
Vvi1g1044 924 Gene3D Ribonuclease Inhibitor 309 403 IPR032675 -
Vvi1g1044 924 SUPERFAMILY L domain-like 42 313 - -
Vvi1g1044 924 Pfam Leucine rich repeat 241 299 IPR001611 GO:0005515
Vvi1g1044 924 SUPERFAMILY L domain-like 235 496 - -
Vvi1g1044 924 Pfam Leucine rich repeat N-terminal domain 46 80 IPR013210 -
Vvi1g1044 924 FunFam Tyrosine-sulfated glycopeptide receptor 1 629 842 - -
Vvi1g1044 924 SUPERFAMILY L domain-like 484 835 - -
Vvi1g1044 924 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 184 432 - -
Vvi1g1044 924 Gene3D Ribonuclease Inhibitor 499 844 IPR032675 -
Vvi1g1044 924 PANTHER LRR RECEPTOR-LIKE KINASE 241 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1044 Vvi-Chr1 11941519 11944293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1044 19 854 Receptor kinase-like Gene Family AT3G05650 31.106 7.74e-94 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1044 - - vvi:100255154 1782.3