Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1034 ATGATGGCTCTCTTCAGGCACAGTGCTGAATTGTTACCCGAGAGAAAGGATAATGTTGTTATAGAGTTTAAATCTCTCAATAGAAATGAGCACAGGATTCGTCGTGGGAGGAAATTTGGTCGCATAACTAAACAAAGATTCTCAGTTTGGCTGACTGTGCTTGCAGTGCTCTTTCTGATCTATTTGATATTTTTTAGCATAAAAATGCTCTTTCATGGTAAAATGGAAGGTGGCATTTCAACTTCGATACAAGTACAACAAGAAATTATGGGAGTAGATGAATTAGATGTTTTAAGGCAAGCAAAAAGCAAGCACCGTAAGAAATATCCTCCCTGTGAGGTTGGGCTTTCAGATTCTGTTGATCATCTTGTTGATGCCAAGGATTTTGTGAACTTCACACAATTTTCACTAGATTATATTGACAAAGAAGAGAAACCTTTTGGGAAGAGTCTATCCAGATTTGGAGGACAACAGAGTCTTGAAGAAAGGGAGAAGTCCTTCTATGCAAGGAATCAAACACTTCATTGTGGTTTTGTGAAAGGACCAGAAGGCTCTCCAAGCACTGGATTTGATCTGGATGCAAATGATAAAACATACATGAATACATGTAAAGTTGTGGTATCTTCTTGCATTTTTGGGAACTCTGACTTTTTGAGAAGGCCGACTAGCAAACGGATAAGTGAATATTCTAAGAAAAACGTTTGTTTTGTCATGTTTGTGGACGAGCAAACACTGTCAAAACTGTCATCGGAGGGAAATTTTCCAGATGATGGAGGGTACATTGGTTTATGGAAAATAGTTGTTGTGAGGAACTTACCTTACAAGGACATGCGGAGAACTGGAAAAGTGCCAAAATTTTTGTCGCACCGCCTTTTCCCTTCTTCCATGTATTCTATTTGGCTTGACAGCAAAATGAGGCTCAATACTGATCCAATGCTGATTCTTGAGTACTTTTTGTGGCGGATGAGGTCAGAGTATGCTATTTCAAACCATTATGATCGCCACTGTGTCTGGGAGGAGGTACTCCAAAATAAGCGTCTAAATAAGTACAATCACTCGGCCATCGATGAGCAGTTTAATTTTTACCAGTCTGATGGCCTCACGAAGTTTGACCCTTCAGACCCAAATAATCCTATTCCAAGTTATGTACCTGAAGGCTCCTTTATTGTGCGGGCCCATACACCAATGTCAAATTTATTTTCATGCCTTTGGTTCAATGAAGTTGACCGTTTTACTTCACGTGATCAACTAAGCTTTGCATATACTTACTTGAAACTGAGGAGGATGAATCCAGATAGACCTTTTTTCCTAAATATGTTCAAGGATTGTGAGCGCAGAGCGCTAGCAAAGCTATTTCGGCATAAGGCGGTGCCTTCACTTCCACCTGCTCCTTGA 1395 0.4007 MMALFRHSAELLPERKDNVVIEFKSLNRNEHRIRRGRKFGRITKQRFSVWLTVLAVLFLIYLIFFSIKMLFHGKMEGGISTSIQVQQEIMGVDELDVLRQAKSKHRKKYPPCEVGLSDSVDHLVDAKDFVNFTQFSLDYIDKEEKPFGKSLSRFGGQQSLEEREKSFYARNQTLHCGFVKGPEGSPSTGFDLDANDKTYMNTCKVVVSSCIFGNSDFLRRPTSKRISEYSKKNVCFVMFVDEQTLSKLSSEGNFPDDGGYIGLWKIVVVRNLPYKDMRRTGKVPKFLSHRLFPSSMYSIWLDSKMRLNTDPMLILEYFLWRMRSEYAISNHYDRHCVWEEVLQNKRLNKYNHSAIDEQFNFYQSDGLTKFDPSDPNNPIPSYVPEGSFIVRAHTPMSNLFSCLWFNEVDRFTSRDQLSFAYTYLKLRRMNPDRPFFLNMFKDCERRALAKLFRHKAVPSLPPAP* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1034 464 Pfam Protein of unknown function (DUF616) 137 454 IPR006852 -
Vvi1g1034 464 PANTHER ALKALINE CERAMIDASE-RELATED 30 456 IPR006852 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1034 Vvi-Chr1 11723352 11729479 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1034 - - vvi:100243155 954.51