Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1033 ATGGAGGCTTGTGTAGCTAGATGTTCGGATGGCGTGTTCTTCAGATGCCTTAATCGTTTCAATTTTAGGCGTTCTTTCAAGCCAATGGCGTCCATCCATGCAGCCTCAGATGGAGGAAGGTGGTTTAACAGAGCATACGATGGATTGTTGTTGGATGCTGGGGGTACACTCCTGCAGTTGGCAAAGCCTGTCGAAAGCACTTATGCCGATATTGGCAGGAAATACGGTTTGACTGCAAGCTCAGCAGAAATAAAGCAAGGATTTAGGAGAGCTTTTGCTGCTCCATGGCCTGAAAAGCTTCGCTACCAGGGTGATGGGCGACCATTTTGGAAACTTGTCGTTTCTGAAGCCACTGGTTGTGCAAATAATGATTATTTTGAAGAAGTATATGAGTACTATGCAAATGGTGATGCATGGCATCTTCCAACTGGAGCTTCTGAAACAATGTTCCTTCTCAAAGATGCTGGAGTTAAGCTAGCCGTTGTATCCAACTTTGACACCCGCTTAAGAAAGCTATTGAAGGACCTCAATGTTTTAGATCTGTTTGATGCTGTTATCATATCTTCAGAGGTTGGATATGAGAAACCAGATGCAAAAATATTTAAAGCTGCTTTGGATCAAATTGGAGTAGAGGCAGGGAAAGCAGTTCATGTTGGAGATGATCAAGAGGCTGATAAGGTGGGGGCTAGTGCTGTTGGGATTGATTGCTGGTTATGGGGAACTGATGTAAAGACATTCTCAGACATACAAAAGCAAATCCTCATTTCAGAGCATTAG 777 0.4363 MEACVARCSDGVFFRCLNRFNFRRSFKPMASIHAASDGGRWFNRAYDGLLLDAGGTLLQLAKPVESTYADIGRKYGLTASSAEIKQGFRRAFAAPWPEKLRYQGDGRPFWKLVVSEATGCANNDYFEEVYEYYANGDAWHLPTGASETMFLLKDAGVKLAVVSNFDTRLRKLLKDLNVLDLFDAVIISSEVGYEKPDAKIFKAALDQIGVEAGKAVHVGDDQEADKVGASAVGIDCWLWGTDVKTFSDIQKQILISEH* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1033 258 Gene3D - 50 240 IPR023214 -
Vvi1g1033 258 NCBIfam HAD-IA family hydrolase 150 233 IPR006439 -
Vvi1g1033 258 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 46 57 IPR006439 -
Vvi1g1033 258 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 152 165 IPR006439 -
Vvi1g1033 258 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 182 198 IPR006439 -
Vvi1g1033 258 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 200 220 IPR006439 -
Vvi1g1033 258 PANTHER - 36 257 - -
Vvi1g1033 258 CDD HAD_dREG-2_like 145 254 - -
Vvi1g1033 258 Pfam Haloacid dehalogenase-like hydrolase 121 236 IPR041492 -
Vvi1g1033 258 NCBIfam HAD hydrolase, REG-2-like, family IA 49 238 IPR011949 -
Vvi1g1033 258 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 49 241 - -
Vvi1g1033 258 SUPERFAMILY HAD-like 46 245 IPR036412 -
Vvi1g1033 258 SFLD Haloacid Dehalogenase 49 241 - -
Vvi1g1033 258 Gene3D - 62 134 IPR044924 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1033 Vvi-Chr1 11715059 11721032 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1033 - - vvi:100255046 518.85