Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1031 ATGGGCAGTCAGAAGAAGAGGAATTTTCAAATAGAGGCGTTCAAGCATCGGGTGGTGGTGGATCCCAAGTACGCCGACAAGACTTGGAAGATATTGGAGCATGCAATCCATGAGATATATAATCACAACGCTAGTGGTCTTAGTTTTGAAGAGCTTTATAGGAACTTAATCAGATGGAATGCTTACAATATGGTACTGCACAAATTTGGTGAGAAGTTGTACTCAGGGCTGGTTTCAACTATGACTTCACATCTCAAAGACATATCAAAGTTTATAGAGGCTGCTCAGGGAGGTTTGTTTCTGGAGGAGCTGAATAGAAAGTGGGCAGATCATAACAAGGCATTGCAAATGATACGAGACATACTAATGTACATGGACAGGACTTTCATACCAAGTACTCATAAAACCCCTGTTCATGAGCTTGGGCTGAATCTGTGGAGGGACAACATTATCCACTCCAGCAAAATCCAAACAAGGCTACTAAATACACTCCTTGAACTAGTACTCAGAGAACGTAATGGTGAAGTCATAAACCGTGGACTGATGAGGAATATAATTAAAATGCTAATGGATTTGGGTTCTTCTGTCTATCAGGAAGACTTTGAAAAGCCTTTCCTTGAGGTTTCAGCTGATTTCTACAGGGTTGAGTCTCAGAAGTTTATTGAGTGCTGTGATTGTGCAGACTACCTGAAGAAAGCTGAAAGACGGCTAAACGAAGAAATGGAAAGGGTATCCCAGTACTTGGATGCCAAGAGTGAAGTCAAGATCACTAATGTGGTGGAGAAGGAGATGATTGCAAACCACATGCTGAGGCTAGTTCATATGGAGAACTCAGGTTTGGTAAACATGCTTCTTGATGATAAATATGATGACCTAGGAAGAATGTACAACTTGTTCCGCCGGGTTCCAAATGGCCTTTCAACAATACGAGAGGTGATGACCTCTCATATCAGGGACACTGGTAAGCATCTTGTTACTGATCCTGAAAGGTTGAGGGATCCTGTAGAATTTGTTCAACGCCTCTTGGATGAAAAAGATAAGTACGATAGAATCATAGGCTCATCATTTAACAATGACAAAACATTCCAGAATGCTTTGACTTCCTCTTTTGAATACTTCATTAATTTGAACCCTCGTTCTCCTGAGTTCATTTCATTATTTGTGGATGACAAACTCCGCAAAGGCCTGAAGGGGGTTAGTGAGGAGGATGTGGAGATTATCCTTGATAAGGTGATGATGCTGTTCCGCTACTTGCAGGAGAAAGACGTATTTGAGAAGTATTATAAACAGCATTTGGCAAAACGACTCCTGTCTGGAAAAACTGTTTCTGATGATGCAGAGAGAAGTCTGATAGTTAAGCTCAAGACAGAGTGTGGGTACCAATTTACTTGCAAATTAGAAGGCATGTTTACCGACATGAAAACCTCTCAGGATACCATGCAAGGATTTAATTCAGCCCATGGTGCTGACTTAGGGGATGGCCCTACGCTGGCTGTCACCGTTTTGACAACAGGGTCTTGGCCTACTCAGCCCAGCATCACCTGCAACCTGCCTACTGAAATGTTGGCTCTCTGTGAGAAGTTCCGGTCATATTACCTTGGGACCCATACTGGTCGGAGATTGACCTGGCAAACTAACATGGGAACAGCTGATATAAAAGCAACTTTTGCTAAGGGCCAGAAGCATGAGCTACACGTGTCCACTTACCAAATGTGTGTTCTTATGCTGTTTAACAATGCTGATCGGCTAAGCTACAAGGAGATTGAGCAGGCAACAGAGATCCCTGCTTCAGATTTGAAGAGGTGCATGCAATCCATGGCTTGTGTAAAAGGTAAAAATGTTCTTCGGAAAGAGCCCATGAGCAAAGATATTGGTGAAGATGATGTATTTTTCGTTAATGACAAATTCACTAATAAACTCTATAAGGTGAAGATAGGAACTGTAGTTGCACAAAAGGAAACAGAGCCTGAAAAACAGGAAACCAGGCAAAGAGTAGAGGAGGATAGGAAGCCACAGATTGAGGCTGCCATAGTGAGGATCATGAAATCGAGGAGGGTACTGGATCATAACAATCTTATTGCTGAGGTGACAAAGCAGTTGCAGTCTCGGTTCCTGGCCAATCCTGTAGAAATTAAAAAACGGATCGAGTCCCTTATTGAACGTGATTTCTTGGAGAGAGACAATGTGGATAGGAAGTTGTACCGATACCTTGCCTGA 2217 0.4249 MGSQKKRNFQIEAFKHRVVVDPKYADKTWKILEHAIHEIYNHNASGLSFEELYRNLIRWNAYNMVLHKFGEKLYSGLVSTMTSHLKDISKFIEAAQGGLFLEELNRKWADHNKALQMIRDILMYMDRTFIPSTHKTPVHELGLNLWRDNIIHSSKIQTRLLNTLLELVLRERNGEVINRGLMRNIIKMLMDLGSSVYQEDFEKPFLEVSADFYRVESQKFIECCDCADYLKKAERRLNEEMERVSQYLDAKSEVKITNVVEKEMIANHMLRLVHMENSGLVNMLLDDKYDDLGRMYNLFRRVPNGLSTIREVMTSHIRDTGKHLVTDPERLRDPVEFVQRLLDEKDKYDRIIGSSFNNDKTFQNALTSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVEIILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTCKLEGMFTDMKTSQDTMQGFNSAHGADLGDGPTLAVTVLTTGSWPTQPSITCNLPTEMLALCEKFRSYYLGTHTGRRLTWQTNMGTADIKATFAKGQKHELHVSTYQMCVLMLFNNADRLSYKEIEQATEIPASDLKRCMQSMACVKGKNVLRKEPMSKDIGEDDVFFVNDKFTNKLYKVKIGTVVAQKETEPEKQETRQRVEEDRKPQIEAAIVRIMKSRRVLDHNNLIAEVTKQLQSRFLANPVEIKKRIESLIERDFLERDNVDRKLYRYLA* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1031 738 Gene3D Cullin; Chain C, Domain 2 495 649 - -
Vvi1g1031 738 FunFam Cullin 3 270 377 - -
Vvi1g1031 738 Pfam Cullin family 29 636 IPR001373 GO:0006511|GO:0031625
Vvi1g1031 738 Gene3D Cullin Repeats 150 269 - -
Vvi1g1031 738 SMART Cullin_Nedd8_2 665 732 IPR019559 -
Vvi1g1031 738 FunFam Cullin 3 650 738 - -
Vvi1g1031 738 FunFam Cullin 3 150 269 - -
Vvi1g1031 738 Coils Coil 230 250 - -
Vvi1g1031 738 Gene3D Cullin Repeats 378 490 - -
Vvi1g1031 738 FunFam Cullin-3A like 495 649 - -
Vvi1g1031 738 Gene3D Cullin Repeats 15 149 - -
Vvi1g1031 738 Gene3D - 650 738 IPR036388 -
Vvi1g1031 738 FunFam Cullin 3 15 149 - -
Vvi1g1031 738 SUPERFAMILY Cullin homology domain 373 646 IPR036317 -
Vvi1g1031 738 ProSiteProfiles Cullin family profile. 379 607 IPR016158 -
Vvi1g1031 738 Pfam Cullin protein neddylation domain 668 728 IPR019559 -
Vvi1g1031 738 SUPERFAMILY Cullin repeat-like 22 377 IPR016159 -
Vvi1g1031 738 FunFam cullin-3 isoform X1 378 490 - -
Vvi1g1031 738 SUPERFAMILY "Winged helix" DNA-binding domain 649 738 IPR036390 -
Vvi1g1031 738 PANTHER CULLIN 24 734 IPR045093 -
Vvi1g1031 738 Gene3D Cullin Repeats 270 377 - -
Vvi1g1031 738 SMART cul_2 409 556 IPR016158 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1031 Vvi-Chr1 11681008 11686909 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1031 K03869 - vvi:100265464 1454.5