Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1026 ATGGCTGATCCGCAGAGAAACGGTCTAGCTGAAAGAGATGTAGAGCAGGCCATTGTAGCTCTTAAGAAAGGTGCATATTTGCTGAAATATGGGCGCAGAGGGAAGCCAAAATTCTGTCCATTCCGACTTTCTAATGACGAATCTATGTTGATATGGTACTCTGGCAAAGAAGAGAAACAGCTTAAACTAAACAATGTTTCAAGAATTATTCCTGGGCAGCGTACTCCAATATTTCAGCGGTATCCTAGGCCAGAAAAAGAATATCAATCATTTTCTCTGATATATGGTGATAGATCATTGGATTTGATTTGTAAAGACAAGGATGAAGCTGAAGTGTGGTTCATCGGTCTTAAGGGATTAATTTCACGTGGTAACTACCGAAAATGGAGAAGTGAAATAAGAGATGATAGTATATCATCGGAGAGTCCACATAGTCGTGCTCGAAGAATTTCTCCATCTCTTTCATCATCCGATCCAGGAGATACTCAACAAACTCAGGTTACTTTTGAGAATATTCCACAGAGTGGGTTGGGAAAGGCATTCTCTGACGTAATATCATATACTGCATCAACCAAGAGCTTTACTCAAGCTGAATCAGTAGCCAGTTCTCTCAGCTCACTGTCATCTGGTGGTGTGGATAACTCAAATGGCCGAACTTCTGCATCTGAGAACTTTCGAGTTAGTTTATCTAGTGCTGTGAGCTCATCAAGTCAGGGTTCTGGTCATGATGATTTTGATGCCCTGGGTGATGTTTTCATGTGGGGGGAAGGCATTGGAGATGGGATTATGGGTGCTGGTGTGCATAGAGTTGGGAGTTCATCTAGTACCAAGATAGATGCCCTTCTGCCCAAGGCATTAGAGTCAACAGTGGTGCTTGATGTTCATAGTATTGCTTGCGGTGGTAAGCATGCTGTGTTAGTCACCAAAAAAGGCGAAGTTTTTAGTTGGGGGGAAGAGTGTGGAAGCAGGCTTGGGCATGGAGTAGAAGTGGATGTTTCCCACCCAAAGCTCATTGATGCCCTTTGTGGCATGAACATTGAACTAGTTGCATGTGGAGAGTATCACAGTTGTGCCGTTACACTTTCTGGGGATCTTTATACATGGGGAGATGGTACTCACAATTCTGGTCTTCTTGGGCATGGAAGTGAGGCTAGTCACTGGATCCCTAAAAAAGTAAGTGGGCCCATGGAGGGTATGCACGTATCATATGTTGCTTGTGGACCTTGGCATACTGCTGTTGTGACATCTGCAGGTCAGTTATTTACATTTGGCGATGGAACTTTTGGTGCCCTGGGCCATGGAGATCATAGTAGCATGAGTATTCCAAGAGAAGTGGAAGCTTTGAGAGGACAGCGTACGATGAGGGTTGCTTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAATTAATGATTGCATCCTCTAGTTTTGAGTCTTCTGGTAGCTCTTCATCTGGAAAACTGTTCACCTGGGGTGATGGAGATAAAGGGCGACTTGGACATGGTGATAAAGAACCCAGACTAGTTCCCCAGTCTGTAACTGCGTTGATTAATGAAAGTTTTTGTCAAGTAGCATGTGGGCATAACCTCTCAGTTGCTCTCACAACCTCAGGACGAGTATATACAATGGGGAGTGCTGTGTATGGACAGCTGGGAAGTCCTGTAGCTGATGGAAAGATTCCAACACTTGTTGAAGGTAAAATCGCAAACAGTTTCGTGGAAGAGGTTGCTTGTGGTTCTTATCATGTCGCAGTTTTGACTTCAAAAACAGAGGTTTATACTTGGGGAAAGGGTACAAATGGGCAATTAGGCCATGGAGACAATGATCACAGAAATACACCCACACTTGTTGATTTTCTAAAGGATAAGCAAGTGAAGAATGTAGTATGTGGTTTAAACTTTACTGCAGCCATTTCTCTTCATAAATGGGTGTCTTGTGCTGACCATTCTATATGCTCTGGTTGTCATAATCAATTTGGTTTCAGAAGAAAACGTCACAACTGTTATAACTGTGGGCTAGTTTTTTGCAACACATGCAGCAGTAGGAAATCTCTGAAAGCTTCTTTGGCTCCAAACATGAACAAGCCATATCGCGTGTGTGATGATTGCTTTACCAAGTTGAAGAAGGCCATGGAATCTGGATCTGTTCTGCGCATTCCTAAAGCGAGGAGTAGTAATATACTTCAGAAGTCCAACGAGATAGCAGAAAGAGACACAATGGGTCCTAGAGTACAGGGACAACTGTCCAGACTCTCATCAGTTGACTCATTCAGTCGAGCTGAAAGCAAACATTACAAGTGCGACACAAAGCTAGAATTTAATGATGCTCGTGTCTCTCCCCATCTGAATGGAAATGTTCAGCGGGGAAGCTTCCATTCATCAAAGTTGTCAAATTCTCTATTTGGAGGTTCAAGGAAGATTTTTTCAGCTTCTCGTCCTGGCTCCAGAATAGTTTCTCGGGCAACATCTCCTGTTTCAGGGAAGTCAAGTCCACCTCAGTCTGCAATGCTAGCAGCATCTCTTGCTGTTGTTAGATCTCCTGAAGCAACGGATGATGATCCAAAGCATACAAATGACAGTCTAAGTCGAGAAATCATAAATTTAAGGGCACAGGTAACTTGA 2619 0.4341 MADPQRNGLAERDVEQAIVALKKGAYLLKYGRRGKPKFCPFRLSNDESMLIWYSGKEEKQLKLNNVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYGDRSLDLICKDKDEAEVWFIGLKGLISRGNYRKWRSEIRDDSISSESPHSRARRISPSLSSSDPGDTQQTQVTFENIPQSGLGKAFSDVISYTASTKSFTQAESVASSLSSLSSGGVDNSNGRTSASENFRVSLSSAVSSSSQGSGHDDFDALGDVFMWGEGIGDGIMGAGVHRVGSSSSTKIDALLPKALESTVVLDVHSIACGGKHAVLVTKKGEVFSWGEECGSRLGHGVEVDVSHPKLIDALCGMNIELVACGEYHSCAVTLSGDLYTWGDGTHNSGLLGHGSEASHWIPKKVSGPMEGMHVSYVACGPWHTAVVTSAGQLFTFGDGTFGALGHGDHSSMSIPREVEALRGQRTMRVACGVWHTAAVVELMIASSSFESSGSSSSGKLFTWGDGDKGRLGHGDKEPRLVPQSVTALINESFCQVACGHNLSVALTTSGRVYTMGSAVYGQLGSPVADGKIPTLVEGKIANSFVEEVACGSYHVAVLTSKTEVYTWGKGTNGQLGHGDNDHRNTPTLVDFLKDKQVKNVVCGLNFTAAISLHKWVSCADHSICSGCHNQFGFRRKRHNCYNCGLVFCNTCSSRKSLKASLAPNMNKPYRVCDDCFTKLKKAMESGSVLRIPKARSSNILQKSNEIAERDTMGPRVQGQLSRLSSVDSFSRAESKHYKCDTKLEFNDARVSPHLNGNVQRGSFHSSKLSNSLFGGSRKIFSASRPGSRIVSRATSPVSGKSSPPQSAMLAASLAVVRSPEATDDDPKHTNDSLSREIINLRAQVT* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1026 872 MobiDBLite consensus disorder prediction 144 164 - -
Vvi1g1026 872 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 537 588 IPR000408 -
Vvi1g1026 872 MobiDBLite consensus disorder prediction 814 835 - -
Vvi1g1026 872 Pfam FYVE zinc finger 641 707 IPR000306 GO:0046872
Vvi1g1026 872 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 404 414 IPR000408 -
Vvi1g1026 872 SUPERFAMILY FYVE/PHD zinc finger 641 715 IPR011011 -
Vvi1g1026 872 CDD PH_PLC_plant-like 12 122 - -
Vvi1g1026 872 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 589 640 IPR000408 -
Vvi1g1026 872 PRINTS Chromosome condensation regulator RCC1 signature 420 434 IPR000408 -
Vvi1g1026 872 PRINTS Chromosome condensation regulator RCC1 signature 584 605 IPR000408 -
Vvi1g1026 872 PRINTS Chromosome condensation regulator RCC1 signature 294 307 IPR000408 -
Vvi1g1026 872 PRINTS Chromosome condensation regulator RCC1 signature 363 379 IPR000408 -
Vvi1g1026 872 PRINTS Chromosome condensation regulator RCC1 signature 526 544 IPR000408 -
Vvi1g1026 872 PRINTS Chromosome condensation regulator RCC1 signature 404 420 IPR000408 -
Vvi1g1026 872 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 363 417 IPR000408 -
Vvi1g1026 872 MobiDBLite consensus disorder prediction 847 861 - -
Vvi1g1026 872 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 456 466 IPR000408 -
Vvi1g1026 872 SMART fyve_4 639 708 IPR000306 GO:0046872
Vvi1g1026 872 FunFam PH, RCC1 and FYVE domains-containing protein 1 220 471 - -
Vvi1g1026 872 Pfam Regulator of chromosome condensation (RCC1) repeat 590 637 IPR000408 -
Vvi1g1026 872 Pfam Regulator of chromosome condensation (RCC1) repeat 310 359 IPR000408 -
Vvi1g1026 872 Pfam Regulator of chromosome condensation (RCC1) repeat 484 533 IPR000408 -
Vvi1g1026 872 Pfam Regulator of chromosome condensation (RCC1) repeat 362 414 IPR000408 -
Vvi1g1026 872 Pfam Regulator of chromosome condensation (RCC1) repeat 418 466 IPR000408 -
Vvi1g1026 872 Pfam Regulator of chromosome condensation (RCC1) repeat 536 585 IPR000408 -
Vvi1g1026 872 SUPERFAMILY PH domain-like 13 121 - -
Vvi1g1026 872 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 418 469 IPR000408 -
Vvi1g1026 872 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 485 536 IPR000408 -
Vvi1g1026 872 Gene3D - 161 373 IPR009091 -
Vvi1g1026 872 Gene3D - 374 469 IPR009091 -
Vvi1g1026 872 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 645 707 IPR017455 -
Vvi1g1026 872 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 871 - -
Vvi1g1026 872 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 249 310 IPR000408 -
Vvi1g1026 872 MobiDBLite consensus disorder prediction 814 872 - -
Vvi1g1026 872 Gene3D - 470 636 IPR009091 -
Vvi1g1026 872 MobiDBLite consensus disorder prediction 134 164 - -
Vvi1g1026 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 716 IPR013083 -
Vvi1g1026 872 Gene3D - 12 128 IPR011993 -
Vvi1g1026 872 SUPERFAMILY RCC1/BLIP-II 248 642 IPR009091 -
Vvi1g1026 872 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 311 362 IPR000408 -
Vvi1g1026 872 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 297 307 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1026 Vvi-Chr1 11577213 11584830 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1026 - - vvi:100250008 1701.03