Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1024 ATGATCTTTGGTAGTGCTTCATGGGTGAGGCAAAAGTTCCAATCTTGGTCATTGCATCACTTCCCTAAGTACTACTCCACAGCCCCAGAAGATCAAAGCCTCATTTCCCTACTGGAATCTTGCACTCAGACCTCTGAAATCTGTCAAGTCCATGGCTCCATGGTCAAAACTGGCCTTGTCAATGTCCCCTTCACTTTGAGCAAGCTTCTTGCATCTTCCATACAAGACACTGACTATGCAGCCTCAATTTTCAACCAGATTCCAAGTCCAAATCTCTTTATGTTCAATACTATGCTTAGAGGCTATTCAATTAGTCACCATCCAAAACAAGCTTTTGTTGTCTTCAAGGGTTTGAGGGCTCAACAAATGATACTCGACCAGTTTTCCTTCATCCCAACCCTCAAAGCTTGTGCTCGCGAATTGGCTTACGAAACTGGCCAAGGGATTCATGGGGTTGTTGTGAGGTCTGGGCATGGACTGTTTACCAACGTGAAGAATGCACTTTTGCATTTTTATTGTGTTTGTGGGAGAATTGGAGATGCCCATCAGTTGTTTGATGAGATTCCTCCGAAAATTGATTTGGTTTCATGGAACACTTTGTTGGGTGGATATCTCCAGGTGCCCCACCCCACTATGGTCACTTGCTTGTTCGGAGAAATGTGTAGGAAAGGTCTAAAATTTAGCACCACAACAATTTCCAGTGTGTTGTGTGCTGTGGGTGATTTGGGAAACATTCTTGGTGGAGTATCTCTTCATGGGCATTGCATTAAGGTTGGCTTTTGTTCAGATTTAAATGTGGCTACTGCTTTGATTGATATGTACGCAAATGCTGGGTTTATTGATTTAGGGCATAAAATTTTTTATCAAGTCCCCAAAAAGGATGTTGTCTTATGGAATTGTTTGATAGATGGGTATGCAAAAAGTGACCTGTTACAAGAATCATTGTCTCTACTGCAACTAATGAAACGTGAACAAGTGAAACCCAATTCATCTACATTGGTAGGGTTGCTTTCGGCTTGCGCTGCTGCCGGAGCATCGAGTGTAGGCCTATGTATCAGCAACTATGTGGAGGAGGAGCAAATAGCATTGGATGCAGTTCTTGGCACCGCTCTGGTTGATATGTACTGTAAATGTGGGTTCCTCGAGAAGGCTATTGATGTTTTTGAAAGGATGGAAATCAAAGACGTGAAATCTTGGACAGCCATGATTTCAGGTTATGGGGTGCACGGGCAGGCAAAAAATGCCATTATGATCTTTCATAGAATGGAGGTGGAGGGCTATAGGCCTAATGAAGTCACTTTCTTAGCAGTTTTGAATGCTTGTAGCCATGGAGGTATGGTTGTAGAGGGGATAAGTTTCTTAGAGAAAATGGTTCGAGAATATGGCTTTTCCCCAAAGGTTGAACACTATGGATGTATGATTGATCTCTTGGGCCGTGCAGGGTTGCTGGAAGAAGCACATAACCTAATCAAGAGTTTGCCCATTGAGGGCGATGCTACCGGGTGGCGTGCATTGCTTGCAGCTTGCAGGGTGTATGGAAATGTTGACTTGGGAGAATGCGTGAAGAGAGTGCTGTTGGAAATCTTTGATGAGCACCCCACTGATTCCATCCTTCTTTCTAGCACATACGCTATTGCAGGAAGGTTGCCTGATTATACAAGAATGCAGGAGATTAAGGAAGAAAAGATGATGAAGGAAGCTGGATGTAGTGTAATTGAGATGGATAGCCATGGGTGGGAGCATATTAGGGAATATGGGAGCTCAAGCAAGGGACCCCCTCATGCGAATGCTTAA 1794 0.4381 MIFGSASWVRQKFQSWSLHHFPKYYSTAPEDQSLISLLESCTQTSEICQVHGSMVKTGLVNVPFTLSKLLASSIQDTDYAASIFNQIPSPNLFMFNTMLRGYSISHHPKQAFVVFKGLRAQQMILDQFSFIPTLKACARELAYETGQGIHGVVVRSGHGLFTNVKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSWNTLLGGYLQVPHPTMVTCLFGEMCRKGLKFSTTTISSVLCAVGDLGNILGGVSLHGHCIKVGFCSDLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSLLQLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDMYCKCGFLEKAIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGYRPNEVTFLAVLNACSHGGMVVEGISFLEKMVREYGFSPKVEHYGCMIDLLGRAGLLEEAHNLIKSLPIEGDATGWRALLAACRVYGNVDLGECVKRVLLEIFDEHPTDSILLSSTYAIAGRLPDYTRMQEIKEEKMMKEAGCSVIEMDSHGWEHIREYGSSSKGPPHANA* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1024 597 NCBIfam pentatricopeptide repeat 369 395 IPR002885 -
Vvi1g1024 597 NCBIfam pentatricopeptide repeat 398 431 IPR002885 -
Vvi1g1024 597 NCBIfam pentatricopeptide repeat 296 329 IPR002885 -
Vvi1g1024 597 NCBIfam pentatricopeptide repeat 432 465 IPR002885 -
Vvi1g1024 597 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 349 425 - -
Vvi1g1024 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Vvi1g1024 597 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 29 577 IPR046960 GO:0003723|GO:0009451
Vvi1g1024 597 FunFam Pentatricopeptide repeat-containing protein At1g26900, mitochondrial 14 149 - -
Vvi1g1024 597 Pfam PPR repeat family 394 442 IPR002885 -
Vvi1g1024 597 Pfam PPR repeat family 293 341 IPR002885 -
Vvi1g1024 597 Gene3D Tetratricopeptide repeat domain 245 347 IPR011990 GO:0005515
Vvi1g1024 597 Gene3D Tetratricopeptide repeat domain 435 546 IPR011990 GO:0005515
Vvi1g1024 597 Gene3D Tetratricopeptide repeat domain 154 244 IPR011990 GO:0005515
Vvi1g1024 597 Pfam PPR repeat 469 492 IPR002885 -
Vvi1g1024 597 Pfam PPR repeat 166 188 IPR002885 -
Vvi1g1024 597 Pfam PPR repeat 195 225 IPR002885 -
Vvi1g1024 597 Pfam PPR repeat 93 117 IPR002885 -
Vvi1g1024 597 Gene3D Tetratricopeptide repeat domain 14 152 IPR011990 GO:0005515
Vvi1g1024 597 Gene3D Tetratricopeptide repeat domain 348 425 IPR011990 GO:0005515
Vvi1g1024 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Vvi1g1024 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Vvi1g1024 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 465 IPR002885 -
Vvi1g1024 597 FunFam Pentatricopeptide repeat-containing protein At1g26900, mitochondrial 150 250 - -
Vvi1g1024 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 394 IPR002885 -
Vvi1g1024 597 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 426 562 - -
Vvi1g1024 597 FunFam Pentatricopeptide repeat-containing protein At4g14850 251 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1024 Vvi-Chr1 11539990 11541783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1024 29 574 Glycoside Hydrolase AT3G49170 30.769 2.63e-84 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1024 - - vvi:100255149 1182.16