Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1023 ATGGCGGCCAGTATAGGGATGATGGACGCTGCCTATTTCGTGGGTAGGGGTGAGATTTTGTCTTGGATCAACGCCACTCTTCATCTCAATCTCTCCAAGGTTGAGGAGGCGGCATCTGGTGCTGTTCAGTGTCAGATGATGGACATGATTCATCCAGGAGTCGTTCCAATGCACAAGGTTAATTTTGATGCAAAAACGGAGTATGACATGATCCAAAATTACAAAATCCTTCAAGAAGTATTCAACAAGTTAAAAATCGAGAAGCATATCGAGGTCAACAAACTTGTTAAAGGACGGCCTTTGGACAACTTGGAGTTTTTACAATGGCTGAAACGATATTGTGATTCCATGAATGGTGGCATAATGAATGAGAATTATAACCCTGTGGAGCGAAGATGCAAAGGTGGTAAAGAAAGGAACATAAAGGGTTCTTACAAGTCTTCAAAATCATTGCAAGCAAATAACTTATCTAATGTCTCTGACAATGGGATTTGCATTGACGAGAGTTCTGGACCCAAAGGAAGGCATAAAAGTGAGATGTCAGGTGGAGCTAATTCTGTTGGTGAGATTCAAGGATTATGCCAGGAGATTGCGGACCTCAAGCTCTCAGTAGATGATCTGGAGAAAGAACGAGATTTCTATTTTGGAAAATTACGTGACATTGAAATCCTTTGTCAAACTCCTGAGGTGGAGGATCTTCCGATGTCCATGGCAATAAAGAAGATCCTGTACGCTGTGGATGCCAAAGTATCAGCTCTTGGTGAAGCTCAGGAAATCATAACCAAATCTGGTGATGATGCTGATGCTGATGCTGATGCTGATGCCTTGGATGTGCATGACTGA 843 0.4247 MAASIGMMDAAYFVGRGEILSWINATLHLNLSKVEEAASGAVQCQMMDMIHPGVVPMHKVNFDAKTEYDMIQNYKILQEVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSMNGGIMNENYNPVERRCKGGKERNIKGSYKSSKSLQANNLSNVSDNGICIDESSGPKGRHKSEMSGGANSVGEIQGLCQEIADLKLSVDDLEKERDFYFGKLRDIEILCQTPEVEDLPMSMAIKKILYAVDAKVSALGEAQEIITKSGDDADADADADALDVHD* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1023 280 FunFam Microtubule-associated protein RP/EB family member 1B 188 263 - -
Vvi1g1023 280 Gene3D - 188 269 - -
Vvi1g1023 280 FunFam RP/EB family microtubule-associated protein 6 134 - -
Vvi1g1023 280 SUPERFAMILY EB1 dimerisation domain-like 189 248 IPR036133 GO:0008017
Vvi1g1023 280 Pfam Calponin homology (CH) domain 17 114 IPR001715 GO:0005515
Vvi1g1023 280 Pfam EB1-like C-terminal motif 207 245 IPR004953 GO:0008017
Vvi1g1023 280 Coils Coil 190 210 - -
Vvi1g1023 280 Gene3D - 6 134 IPR036872 -
Vvi1g1023 280 SUPERFAMILY Calponin-homology domain, CH-domain 5 132 IPR036872 -
Vvi1g1023 280 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 182 252 IPR004953 GO:0008017
Vvi1g1023 280 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
Vvi1g1023 280 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 6 258 IPR027328 GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1023 Vvi-Chr1 11515142 11528269 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1023 K10436 - vvi:100244878 530.406