Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1019 ATGTTGGAGGGTCGGTCCTGTCTGTTTTCAAGGGCATTACCGAGCTCCTGCGAACAAGAAAGCAACTGGTCTTACATGACTTACCGGGTCGAGAAAAAAGAGAAACGCCCATTAGAAATTGATGCAGAAGAAGAACTCCAAGTTGAAGATGCAAATGGAAAGTGCCCACCAGATATTGATGCCCAAGAAAAACAAGTCATCCCAGCCATAAAAAGGAGACGCCCATTAGAATTTGATAGCGAAGAAGAGTTCCGAATCAACCTGGCAATTGGAAAGTGCCCACTGGAAATTGATTTAGAAGACCAACACCACCCTGATGTTGCAGGTGGGAAGCGGCCACTAGAAATTGATGAAGAAGAACCCCAATTAAGTTCGTTCTTTAAGCTGACCGAAGCTCATGAAAGTGTCGAACCAACTCCGACCATAAGTGATCTCACATTATCCCCTGAAGATCAATCCCATAAACAGGGTCCCCCAGAGGATGAGTCAGATAAGCCCGGAATCAACCTCTCTCTGTCATTGGCAGACCAATCCAATAGCCAGCATCAAGCTGAATTTAATTCAGATTTGGATTCCCTTATCCAACCCATTGGCAGAGACTTGTCAATTAGTTGTCTCATCCGATGCTCAAGGTCGGATTATGGTTTTATTGCTTCTCTAAATCGAAGCTTTCGTTCGATAATTCGGAGTGGTGAGCTCTACAGAGAAAGGCGGAAGAACGGGGTGATTGAACACTGGATTTATTTTTCTTGTCAACTTCTTGAATGGGAAGCTTTTGATCCAATTCGCCATCGTTGGATGCGATTGCCAACAATGACCTTCAATGAATGCTTCATGTGTTCAGATAAGGAGTCTTTGGCTGTGGGCACTGAACTTCTTGTATTTGGGAAGGAGGTGATGTCCCACGTTATCTATAGGTACAGCATTTTAACAAACTCATGGTCTTCTGGAATGAGTATGAACGCGCCAAGATGCTTGTTTGGGTCTGCCAGCCTGGGGGAGATTGCAATTTTAGCTGGTGGCTGTGATTCACAGGGAAACATCTTGAGCTCTGCAGAACTTTATAACTCCGAGACAGGAGCTTGGGAGATGCTACCAAGCATGAATAAACCGAGGAAGATGTGTTCTGGGGTATTTATGGATGGCAAGTTTTATGTCATTGGGGGAATTGGAGGAAGTGACTCAAAGCCCCTTCCATGCGGAGAGGAGTATAATTTGCAGACAAGAGTTTGGACTGAAATTGCTGACATGTCCCCTGTACGAAGTGGTGCACCCAGGGAGAATGAGACTGCTGCAGCTGAGGCTCCTCCTCTAGTAGCAGTAGTAAACAATGAATTATATGCAGCTGATTACGCAGACATGGAGGTGAGGAAATATGAAAAGGAGAGTAGACTGTGGCTTACAGTGGGGAGGTTGCCTGAACGGGCGGTTTCAATGAATGGTTGGGGTCTTGCATTTAGAGCATGTGGAGATAAACTTGTTGTCATTGGCGGACCCAGAGCTTTGGGCGAAGGGTTTATAGAGCTCAATTCATGGGTCCCAAGTGAAGGGCCTCCACAGTGGAACGTGCTTGCTGTGAAGCAATCGGGTAACTTTGTCTATAATTGTGCTGTGATGGGATGCTGA 1626 0.4576 MLEGRSCLFSRALPSSCEQESNWSYMTYRVEKKEKRPLEIDAEEELQVEDANGKCPPDIDAQEKQVIPAIKRRRPLEFDSEEEFRINLAIGKCPLEIDLEDQHHPDVAGGKRPLEIDEEEPQLSSFFKLTEAHESVEPTPTISDLTLSPEDQSHKQGPPEDESDKPGINLSLSLADQSNSQHQAEFNSDLDSLIQPIGRDLSISCLIRCSRSDYGFIASLNRSFRSIIRSGELYRERRKNGVIEHWIYFSCQLLEWEAFDPIRHRWMRLPTMTFNECFMCSDKESLAVGTELLVFGKEVMSHVIYRYSILTNSWSSGMSMNAPRCLFGSASLGEIAILAGGCDSQGNILSSAELYNSETGAWEMLPSMNKPRKMCSGVFMDGKFYVIGGIGGSDSKPLPCGEEYNLQTRVWTEIADMSPVRSGAPRENETAAAEAPPLVAVVNNELYAADYADMEVRKYEKESRLWLTVGRLPERAVSMNGWGLAFRACGDKLVVIGGPRALGEGFIELNSWVPSEGPPQWNVLAVKQSGNFVYNCAVMGC* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1019 541 Gene3D - 235 518 IPR015915 GO:0005515
Vvi1g1019 541 SMART kelc_smart 291 334 IPR006652 GO:0005515
Vvi1g1019 541 SMART kelc_smart 383 437 IPR006652 GO:0005515
Vvi1g1019 541 SMART kelc_smart 335 382 IPR006652 GO:0005515
Vvi1g1019 541 MobiDBLite consensus disorder prediction 132 170 - -
Vvi1g1019 541 MobiDBLite consensus disorder prediction 136 153 - -
Vvi1g1019 541 Pfam Kelch motif 323 369 IPR006652 GO:0005515
Vvi1g1019 541 Pfam Kelch motif 371 418 IPR006652 GO:0005515
Vvi1g1019 541 FunFam F-box/kelch-repeat protein SKIP11 239 526 - -
Vvi1g1019 541 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 183 541 - -
Vvi1g1019 541 SUPERFAMILY Kelch motif 253 537 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1019 Vvi-Chr1 11465791 11467416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1019 200 433 EF-hand Containing Proteins AT4G39560 25.532 5.52e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1019 - - vvi:100249995 1104.35