Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1001 ATGGTGTTGGTGTTAGCTTTAGGGGATCTTCACATCCCTCACAGAGCACCTGATCTGCCTCCAAAATTCAAGTCCATGCTTGTTCCTGGCAAGATCCAGCACATCATATGCACCGGCAATCTTTGCATCAAAGAAGTTCATGATTATTTGAAGAGTCTTTGTCCGGACATGCATGTCACCCGAGGTGAATATGATGAAGATTCACGTTACCTGGAGACCAAGACACTTACAATCGGTCAATTTAAGCTTGGAGTATGCCATGGTCATCAGGTTATTCCATGGGGAGACTTGGATTCGCTGGCAATGCTACAAAGGCAGTTGGATGTGGACATCCTAGTGACTGGACACACCCATCAGTTCAAGGCCTACAAACATGAGGGTGGTGTCGTTATAAACCCTGGTTCTGCCACTGGTGCCTACAGCAGTATCACCTATGATGTAAATCCAAGCTTTGTCCTCATGGACATTGATGGCTTGCGGGTTGTGGTTTATGTATACGAACTCATTGATGGTGAAGTGAAGGTTGACAAAATTGATTTCAAGAAGACAGCCACTACAAACTCTGCTCACTGA 573 0.4538 MVLVLALGDLHIPHRAPDLPPKFKSMLVPGKIQHIICTGNLCIKEVHDYLKSLCPDMHVTRGEYDEDSRYLETKTLTIGQFKLGVCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTATTNSAH* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1001 190 CDD MPP_Vps29 3 180 IPR028661 GO:0030904|GO:0042147
Vvi1g1001 190 Gene3D - 1 182 IPR029052 -
Vvi1g1001 190 NCBIfam YfcE family phosphodiesterase 3 157 IPR000979 -
Vvi1g1001 190 Pfam Calcineurin-like phosphoesterase superfamily domain 4 157 IPR024654 -
Vvi1g1001 190 SUPERFAMILY Metallo-dependent phosphatases 1 181 IPR029052 -
Vvi1g1001 190 PANTHER VACUOLAR SORTING PROTEIN VPS29 1 184 IPR000979 -
Vvi1g1001 190 FunFam Vacuolar protein sorting-associated protein 29 1 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1001 Vvi-Chr1 11224953 11227450 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1001 K18467 - vvi:100248182 393.66