Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0986 ATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAGAGGTTGCAACAGGATCCACCTGCAGGCATCAGTGGTGCTCCTCAAGACAATAACATTATGCTCTGGAATGCTGTTATATTTGGACCTGATGACACACCTTGGGACGGAGGTACGTTTAAATTGACGCTTCAGTTTACAGAGGATTATCCGAATAAGCCACCAACTGTACGCTTTGTTTCTAGAATGTTCCATCCAAATATTTATGCGGATGGAAGCATTTGCTTAGACATTCTACAAAATCAGTGGAGTCCAATTTATGATGTAGCTGCCATACTTACATCCATCCAGTCGCTGCTTTGTGACCCAAACCCAAACTCTCCTGCAAATTCAGAAGCAGCACGGATGTTTAGTGAGAACAAGCGTGAATACAACAGAAGAGTGCGTGAGATTGTTGAGCAGAGTTGGACAGCTGATTGA 459 0.4444 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0986 152 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 150 IPR000608 -
Vvi1g0986 152 SUPERFAMILY UBC-like 1 150 IPR016135 -
Vvi1g0986 152 FunFam Ubiquitin-conjugating enzyme E2 2 1 148 - -
Vvi1g0986 152 Pfam Ubiquitin-conjugating enzyme 8 144 IPR000608 -
Vvi1g0986 152 CDD UBCc 7 145 IPR000608 -
Vvi1g0986 152 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Vvi1g0986 152 SMART ubc_7 7 150 - -
Vvi1g0986 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 149 - -
Vvi1g0986 152 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0986 Vvi-Chr1 11009599 11013082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0986 7 120 Miscellaneous Gene Families AT1G17280 31.092 5.29e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0986 K10573 - ncol:116247691 320.087