Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0984 ATGAAGCGCGACATTGCAAAACTGGTTTCCAATGGATTCTACAGAGAAGCCCTTTCTTTATACTCCAAACTCCACTCTTCCTCCGTCCTTGAGCACAAATTCACCTTCCCTTTTCTTCTCAAAGCCAGTGCCAAGCTCAATTCACCTCTCCAAGGCCAAATCCTACACACCCAACTCATTAAAACCGGATTTCATTTAGATATTTATGCGGCCACTGCTCTCGCAGACATGTACATGAAACTTCATCTTTTGAGCTATGCTCTCAAGGTGTTCGAAGAAATGCCTCACCGAAACTTGCCTTCACTGAACGTCACGATTTCTGGATTTTCGCGAAATGGGTATTTCAGAGAGGCCCTGGGGGCGTTCAAACAGGTGGGGTTGGGGAATTTCAGGCCCAATTCAGTTACCATAGCTAGTGTTCTGCCTGCATGTGCAAGTGTTGAACTTGATGGGCAAGTACATTGCTTGGCGATAAAGTTGGGTGTTGAGTCGGATATTTATGTGGCGACCGCGGTTGTGACGATGTATTCGAATTGTGGGGAGCTGGTTTTGGCTAAGAAAGTGTTTGATCAGATTTTGGATAAGAATGTTGTCAGCTACAATGCTTTTATTTCAGGGCTTTTGCAAAATGGGGCTCCGCATTTGGTCTTTGATGTGTTTAAGGACTTGTTGGAGTCTTCAGGTGAAGTACCCAATTCGGTGACACTGGTTTCAATTCTTTCTGCATGTTCGAAACTTTTGTATATTCGATTTGGTAGGCAGATTCATGGGCTGGTTGTGAAGATTGAGATCAATTTTGATACTATGGTGGGAACTGCACTTGTGGACATGTACTCCAAATGTGGTTGTTGGCATTGGGCTTATGGCATATTCATAGAACTGAGTGGCAGCAGGAACCTAGTAACATGGAATTCAATGATTGCTGGAATGATGTTGAATGGTCAGAGTGACATTGCTGTTGAACTTTTTGAACAGTTAGAACCTGAAGGATTGGAACCTGATTCAGCAACATGGAATACAATGATTAGTGGGTTTTCGCAACAAGGGCAGGTGGTTGAAGCTTTTAAGTTCTTCCATAAAATGCAATCAGCTGGTGTAATAGCTAGTTTAAAATCTATCACAAGTCTTTTACGGGCTTGCTCAGCTCTGTCTGCTTTGCAAAGTGGAAAAGAGATTCATGGGCACACAATTAGAACCAATATCGATACTGATGAATTCATTTCTACTGCACTCATTGACATGTACATGAAATGCGGTCATTCTTATTTGGCTCGAAGAGTTTTTTGCCAGTTTCAGATAAAACCTGATGACCCAGCATTTTGGAATGCAATGATTTCTGGGTATGGAAGGAATGGAAAGTATCAATCTGCATTTGAGATTTTCAATCAGATGCAGGAAGAAAAAGTGCAACCAAATTCAGCAACACTCGTCAGTATCCTATCTGTGTGCAGTCACACAGGTGAGATTGACAGAGGATGGCAATTGTTTAAGATGATGAATAGAGACTATGGCCTGAACCCAACTTCGGAGCATTTTGGTTGCATGGTTGACCTTTTAGGTAGATCTGGTAGGTTGAAGGAAGCTCAAGAACTTATTCATGAAATGCCAGAGGCATCCGTTTCTGTTTTCGCTTCTTTGCTTGGTGCTTGTAGGCATCATTCGGATTCTGCTTTGGGAGAAGAAATGGCTAAAAAACTTTCAGAGTTAGAGCCACAGGACCCAACCCCTTTTGTGATTTTGTCCAACATATATGCTGTTCAAGGAAGGTGGGGTGATGTAGAAAGGGTCAGAGAAATGATGAATGATAGGGGATTGAAAAAACCCCCTGGCTGTAGTTCAATTGGAGTGACATGA 1854 0.425 MKRDIAKLVSNGFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACASVELDGQVHCLAIKLGVESDIYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHTGEIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMPEASVSVFASLLGACRHHSDSALGEEMAKKLSELEPQDPTPFVILSNIYAVQGRWGDVERVREMMNDRGLKKPPGCSSIGVT* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0984 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Vvi1g0984 617 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 334 615 IPR046960 GO:0003723|GO:0009451
Vvi1g0984 617 NCBIfam pentatricopeptide repeat 441 472 IPR002885 -
Vvi1g0984 617 NCBIfam pentatricopeptide repeat 301 334 IPR002885 -
Vvi1g0984 617 NCBIfam pentatricopeptide repeat 198 232 IPR002885 -
Vvi1g0984 617 NCBIfam pentatricopeptide repeat 337 367 IPR002885 -
Vvi1g0984 617 FunFam Pentatricopeptide repeat-containing protein At1g19720 261 388 - -
Vvi1g0984 617 FunFam Pentatricopeptide repeat-containing protein At4g14850 152 251 - -
Vvi1g0984 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Vvi1g0984 617 FunFam Pentatricopeptide repeat-containing protein 491 613 - -
Vvi1g0984 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Vvi1g0984 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 231 IPR002885 -
Vvi1g0984 617 FunFam Pentatricopeptide repeat-containing protein 1 151 - -
Vvi1g0984 617 Pfam PPR repeat family 195 244 IPR002885 -
Vvi1g0984 617 Pfam PPR repeat family 333 380 IPR002885 -
Vvi1g0984 617 Pfam PPR repeat family 440 482 IPR002885 -
Vvi1g0984 617 Gene3D Tetratricopeptide repeat domain 261 391 IPR011990 GO:0005515
Vvi1g0984 617 Gene3D Tetratricopeptide repeat domain 153 249 IPR011990 GO:0005515
Vvi1g0984 617 Gene3D Tetratricopeptide repeat domain 392 488 IPR011990 GO:0005515
Vvi1g0984 617 Gene3D Tetratricopeptide repeat domain 489 614 IPR011990 GO:0005515
Vvi1g0984 617 FunFam Pentatricopeptide repeat-containing protein 389 490 - -
Vvi1g0984 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Vvi1g0984 617 Pfam PPR repeat 72 98 IPR002885 -
Vvi1g0984 617 Pfam PPR repeat 272 294 IPR002885 -
Vvi1g0984 617 Pfam PPR repeat 301 326 IPR002885 -
Vvi1g0984 617 Pfam PPR repeat 512 538 IPR002885 -
Vvi1g0984 617 Pfam PPR repeat 103 124 IPR002885 -
Vvi1g0984 617 Pfam E motif 553 614 IPR046848 -
Vvi1g0984 617 Gene3D Tetratricopeptide repeat domain 1 152 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0984 Vvi-Chr1 10987353 10989206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0984 10 616 Glycoside Hydrolase AT3G49170 31.442 4.66e-91 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0984 - - vvi:100256969 1229.54