Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0975 ATGTCGACCGTCTGCATAGAGCCTCTCTTTCAGCGCTGTCGCAGAGAAAACCCTAGATTTCGTCTCAAGTCGCTGGCAACGAAGCCGTCCTCTTTGAATTACTCTCCGAAGCCGCTCCGCAATGGCGGGAGCTTTTGCAACTTCAAATCTCTTCATGGAGTTCGTCCTCTCGGAGCTGCTTCGATTGATACAGCGCTTTTCGAGACTACAGACGTCTTCTTCAAGGAGACATTTATATTGAAGCGAACTGAAGTGGTGGAGGGAAAGATTTCAATCAGATTGGATCCCGGGAAGAATGGAGAGAATTGGCAGCTTACTGTGGGATGTAACATTCCTGGCAGCTGGGTTCTGCATTGGGGTGTTTCTTATATCGATGATGTTGGCAGTGAATGGGATCAGCCTCCTCTAGAAATGAGACCTCCTGGTTCCGTAGCTATTAAAGACTATGCCATAGAGACACCATTGAAGAAATTGTCCTCTGCTTCAGAAAGAGATACACTTCATGAAGTGACCATTGATTTTAGTCCTAACAGTGAAATTGCTGCTATACGTTTTGTTTTGAAGGATGAAGATTATGGAGCTTGGTATCAGCATCGAGGGAGGGATTTTGAAGTTCTTCTTATGGATTACCTTTGTGAGGGTACCAATACTGTAGGAGCAAAGGAGGGCTTTGGAATATGGCCAGGGCCTTTGGGACAGCTGTCTAACATGCTTCTCAAAGCAGAAGGATCTCACCCTAAAGGTCAAGATAGCAGCAGTGTATCTGGAGACCTTATTACTGGGTTCTATGAGGAGCATTCTATTGTAAAAGAAGTACCCGTGGATAACTCAGTGAATGTATCTGTAAAGAAATGTCCGGAGACAGCTAGGAATCTTCTGTACTTAGAAACCGATCTAATTGGAGATGTTGTTGTTCACTGGGGAGTTTGTCGAGATGATAGTAAGACATGGGAAATTCCAGCTGCTCCTCACCCACCAGAAACAAAACTATTTAAGAAGAAAGCTTTGCGGACTCTATTACAGTCAAAAGAGGATGGGCATGGAAGTTGGGGATTATTTACTTTAGATGAAGAACTTGAGGGTTTCCTTTTTGTGCTCAAGTTAAATGAAAACACTTGGTTGAGATGTATGGGAAATGACTTCTACATCCCCCTTTTAGGTTCAAGTAGTTTGCCTGCTCAATCTAGGCAGGGTCAATCAGAAGGTTGGGGAAAATCTGAGAGAGTGGTATCAGTTCCTACGGAGATATCAGGGAAAACTGCTGGAGAGAATGAAATAGTTTCTGATGCTGCATATACTGATGGAATTATTAATGATATAAGGAATTTAGTGAGTGATATTTCCTCTGAAAAGCGTCAGAAAACAAAAACCAAACAAGCACAAGAAAGCATTCTCCAAGAGATAGAAAAGTTAGCTGCAGAAGCCTATAGTATCTTCAGAAGCTCCATTCCAACCTTTTCTGAGGATGCTGTTTTGGAAACATTAAAACCACCTGAAAAACTCACCTCAGGAACAGGCTCCGGGTTTGAGATACTGTGCCAAGGATTCAACTGGGAATCTAATAAATCTGGAAGATGGTACATGGAGCTCAGTAAAAAAGTTGCAGAATTATCTTCTCTTGGTTTCACTGTGGTTTGGTTGCCTCCACCTACAGCATCTGTGTCACCTGAAGGTTACATGCCAACGGATTTATATAACTTAAATTCCAGATATGGAAGTAGTGATGAACTAAAGGTTCTTGTGAAGAGTTTCCATGAAGTCGGTGTGAAAGTCCTCGGAGATGTTGTTTTGAATCATCGATGTGCTCAATATCAGAATCAAAATGGTATTTGGAATATTTTTGGTGGTCGTTTGAATTGGGATGACCGTGCAATTGTTGCAGATGATCCTCATTTCCAGGGCAGGGGCAACAAGAGCAGTGGGGATAATTTTCATGCTGCTCCAAACATTGATCATTCACAAGATTTCGTGAGGGAGGACATCAAAGAATGGTTATGCTGGTTGAGGAAAGAAATCGGGTATGATGGATGGAGGCTTGATTTTGTTCGGGGATTTTGGGGTGGTTATGTCAAGGACTATATGGATGCAAGTGAACCTTACTTTGCTGTAGGCGAGTATTGGGATTCTCTCAGTTATACATATGGTGAAATGGATCATAATCAAGATGCGCATAGGCAGAGAATCATTGACTGGATTAATGCTACTAATGGGGCTGCAGGTGCATTTGATGTCACAACAAAAGGAATTCTCCATTCTGCACTGGGAAGATGTGAATATTGGCGCTTATCTGATCAGAAGAGAAAGCCTCCAGGGGTTGTTGGCTGGTGGCCATCTCGAGCAGTTACCTTTATTGAGAATCATGACACTGGTTCTACTCAGGGTCACTGGAGATTTCCTGGTGGAAAGGAAATGCAAGGATATGCATACATCCTGACTCATCCTGGGACGCCAGCAGTTTTCTTTGATCATCTCTTCTCTCACTACCGATCTGAAATTGCATCACTCATCTCTCTCAGAAATCGGAATGAGATCCATTGTCGGAGTACAATTCAAATCACAATGGCAGAAAGGGATGTGTATGCAGCCATCATAGATGAAAAAGTAGCGATGAAGATCGGACCAGGTTATTATGAGCCCCCAAAAGGGCAGCAGAGATGGACTTTGGCTCTTGAGGGTAAAGATTACAAGATTTGGGAAACCTCATAA 2706 0.429 MSTVCIEPLFQRCRRENPRFRLKSLATKPSSLNYSPKPLRNGGSFCNFKSLHGVRPLGAASIDTALFETTDVFFKETFILKRTEVVEGKISIRLDPGKNGENWQLTVGCNIPGSWVLHWGVSYIDDVGSEWDQPPLEMRPPGSVAIKDYAIETPLKKLSSASERDTLHEVTIDFSPNSEIAAIRFVLKDEDYGAWYQHRGRDFEVLLMDYLCEGTNTVGAKEGFGIWPGPLGQLSNMLLKAEGSHPKGQDSSSVSGDLITGFYEEHSIVKEVPVDNSVNVSVKKCPETARNLLYLETDLIGDVVVHWGVCRDDSKTWEIPAAPHPPETKLFKKKALRTLLQSKEDGHGSWGLFTLDEELEGFLFVLKLNENTWLRCMGNDFYIPLLGSSSLPAQSRQGQSEGWGKSERVVSVPTEISGKTAGENEIVSDAAYTDGIINDIRNLVSDISSEKRQKTKTKQAQESILQEIEKLAAEAYSIFRSSIPTFSEDAVLETLKPPEKLTSGTGSGFEILCQGFNWESNKSGRWYMELSKKVAELSSLGFTVVWLPPPTASVSPEGYMPTDLYNLNSRYGSSDELKVLVKSFHEVGVKVLGDVVLNHRCAQYQNQNGIWNIFGGRLNWDDRAIVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVREDIKEWLCWLRKEIGYDGWRLDFVRGFWGGYVKDYMDASEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINATNGAAGAFDVTTKGILHSALGRCEYWRLSDQKRKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGKEMQGYAYILTHPGTPAVFFDHLFSHYRSEIASLISLRNRNEIHCRSTIQITMAERDVYAAIIDEKVAMKIGPGYYEPPKGQQRWTLALEGKDYKIWETS* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0975 901 Gene3D - 844 900 IPR013780 -
Vvi1g0975 901 SMART aamy 510 839 IPR006047 GO:0005975
Vvi1g0975 901 SUPERFAMILY Glycosyl hydrolase domain 844 899 - -
Vvi1g0975 901 CDD AmyAc_arch_bac_plant_AmyA 511 850 - -
Vvi1g0975 901 PANTHER ALPHA-AMYLASE 478 900 - -
Vvi1g0975 901 SMART alpha-amyl_c2 840 900 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vvi1g0975 901 Gene3D Glycosidases 510 843 - -
Vvi1g0975 901 Pfam Alpha amylase, catalytic domain 533 792 IPR006047 GO:0005975
Vvi1g0975 901 SUPERFAMILY (Trans)glycosidases 511 827 IPR017853 -
Vvi1g0975 901 Pfam Alpha-amylase C-terminal beta-sheet domain 841 899 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vvi1g0975 901 PRINTS Alpha-amylase signature 588 599 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vvi1g0975 901 PRINTS Alpha-amylase signature 674 685 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vvi1g0975 901 PRINTS Alpha-amylase signature 778 790 IPR006046 GO:0004556|GO:0005975|GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0975 Vvi-Chr1 10829237 10841717 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0975 1 901 Glycoside Hydrolase AT1G69830 66.376 0.0 1224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0975 K01176 - vvi:100267346 1872.44