Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0968 ATGCCTCTGTCAACCTTTGGTTTTGATATTTCGACCCCGTCCAGCAATAATGGAGGCAGTTGGTTTCTTCTGCATTCGAGCATAGGCATATCCGCCATGCACATGCAGATTCTTCACAACAACAAGATCATCATTTTCGACCGGACCGATTTCGGAGCTTCCAACCTCTCTCTCCCCGACGGACACTGCAGGAGCGACCCCAACGACATGGCTCTCAAGGTCGATTGCACCGCTCACTCTTTGCTTTACGACGTCCTTCTTAACTCTATCCGCCCTCTCATGTTGCAAACCGACACCTGGTGTTCCTCGGGCTCCGTCATAGCCGACGGCACTCTCATCCAGACCGGTGGATACAACGACGGCGAGCGCGTGGCTCGCACTTTCACGCCTTGCAACGACGACCAATGCGACTGGAAGGAGCTTCCGGAGTACCTCTCCGTCCGGCGGTGGTACGCTTCTAACCAAATTCTCCCTGATGGGCGTATCATCGTGGTCGGAGGTCGGAACGCCTTCAGCTATGAGTTCTTTCCCAAGAACACCCTTAATTCTACTTCACAGCCCAATTACTATCTGAAGTTTTTGAAAGACACCCGAGACCCCAAAGAAGAGAACAATCTTTATCCATTCTTGCACCTCTTACCGGACGGCAATCTCTTCATCTTCGCCAACAAACGCTCAATCTCGTTTGACTACACCCAAAACCGCGTAGTCAAAGAGTTTCCGGTGATTCCTGGAGAAGACAGCCGCTCCTACCCCAGCACCGGATCGTCGGTGATGCTCCCACTCCGTCTAACCAGCGGCAACCAGTCTCAGTCTCCGGAAGTTGAGATTCTGGTGTGCGGCGGTGCACCAAAAGGTTCTTACAGCAAGGCAGAACGCGGCACCTACATCTCCGCATCCAAAACATGCGGGCGGATCAAAGTAACCGACCCGAACCCCAAATGGGTGATGGAGCAAATGCCCATGCCACGAGTGATGTCCGACATGATAATCCTACCGACCGGCGACGTACTCCTCATCAACGGCGCCTCAAACGGCACAGCTGGGTGGGAGGACGGTCGAAACCCGGTTCTGAACCCGGTTCTCTACAGAAGCTACGCATCGGACCCAAGTCAGAGGTTTTGGGTTCTGAACCCTTCCAGAACTCCAAGAATGTACCACTCCGGTGCAGTGTTGGTACCAGATGGGCGTGTGATAGTTGGAGGCAGCAACCCTCATCGCGTCTACAACTTCACAGCATACCCTTACCCTACAGAGTTGGGCCTGGAGGCATTTTCTCCACCATACCTGGCCCCCCGCTACTCATATCTCCGCCCTTCCATCTTATCAATCGAGACACCCCAGAACGTGCTACTCTATCGGGGATCCTTCTCCATTTCGTTGACGTTGTCTCTGTATCTGCGGAGCAGGGGGATTGAGGTTATGATCATGACGCCCTCCTTTACTACACATTCATTTGCGATGAATCAGAGGGCGGTGGTGTTGAACGTGACGAGCATGGCTCAGTTGTCGCTGTTTGCGTATAAGCTTGTGGTGAGCGGGCCCCAGAAAACCGCCATTGCGCCGCCTGGATATTACATGTTGTTTGTGGTCCATGCTGGAACTCCCAGCCAAGGTGTTTGGGTGAAGGTGCAGTGA 1638 0.5348 MPLSTFGFDISTPSSNNGGSWFLLHSSIGISAMHMQILHNNKIIIFDRTDFGASNLSLPDGHCRSDPNDMALKVDCTAHSLLYDVLLNSIRPLMLQTDTWCSSGSVIADGTLIQTGGYNDGERVARTFTPCNDDQCDWKELPEYLSVRRWYASNQILPDGRIIVVGGRNAFSYEFFPKNTLNSTSQPNYYLKFLKDTRDPKEENNLYPFLHLLPDGNLFIFANKRSISFDYTQNRVVKEFPVIPGEDSRSYPSTGSSVMLPLRLTSGNQSQSPEVEILVCGGAPKGSYSKAERGTYISASKTCGRIKVTDPNPKWVMEQMPMPRVMSDMIILPTGDVLLINGASNGTAGWEDGRNPVLNPVLYRSYASDPSQRFWVLNPSRTPRMYHSGAVLVPDGRVIVGGSNPHRVYNFTAYPYPTELGLEAFSPPYLAPRYSYLRPSILSIETPQNVLLYRGSFSISLTLSLYLRSRGIEVMIMTPSFTTHSFAMNQRAVVLNVTSMAQLSLFAYKLVVSGPQKTAIAPPGYYMLFVVHAGTPSQGVWVKVQ* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0968 545 PANTHER SECRETED PROTEIN-RELATED 17 544 - -
Vvi1g0968 545 SUPERFAMILY E set domains 434 544 IPR014756 -
Vvi1g0968 545 Gene3D Immunoglobulins 437 545 IPR013783 -
Vvi1g0968 545 Gene3D - 15 433 IPR037293 -
Vvi1g0968 545 SUPERFAMILY Galactose oxidase, central domain 80 416 IPR011043 -
Vvi1g0968 545 CDD E_set_GO_C 438 544 IPR015202 -
Vvi1g0968 545 Pfam Galactose oxidase-like, Early set domain 438 544 IPR015202 -
Vvi1g0968 545 Pfam Glyoxal oxidase N-terminus 33 282 IPR009880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0968 Vvi-Chr1 10652614 10654251 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0968 - - vvi:100253553 1112.83