Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0966 ATGGTAGAGCCATGCACCACGTTGAGAGAGCTGAAGCAAATTCATACCCAACTGCTCATTAACGGTCTTCTTAACGACCCTCAGCTTGTAGGCCAATTTGTAGCCTCCATAGCCCTCAATAACCCCAACAATCTCCATTATTCCAATCAAGTCCTTGATAACTCTCAGAACCCAACCCTCTTCACCTTCAACTCTATGATTAGAGCCCACTCCAAAAGTTCAACCCCTCATCGAAGCTTTCACTTCTATAGCAGAATTCTTCATTCCGCTGGCTATCTTGCCCCCGATAACTACACTTTCACGTTCTTGGTTCGTACCTCTGCTCAGCTATTGGCGCACGGGACTGGTTCGTCTGTACATGGTGCCGCTGTGAAATATGGGTTTGAGTATGACCCACATGTTCAAAGTGGGTTGATTTACATGTACGCAGAATTGGGTGGCTTGGATGCTTGCCATCGGGTGTTTTCATCAATTTGTGAGCCAGATTTGGTGTGTCAGACCGCAATGGTGAGTGCATGTGCCAAGATGGGAGATGTTGGTTTTGCTCGGAAGCTGTTTGATAAAATGTCCCACAAGGACCCTATTGCATGGAATGCAATGATTTCGGGATATGTGCAATGTGGGCAGTCAAGAGAGGCATTGAGTTTATTCAATTTAATGCAAAGGGAGGGCGTGAAGGTGAATGAGGTGTCCATGGTCTCAGTTTTATCTGCATGCTCGCACTTAGGTGCATTGGATCAAGGGAGATGGGCTCATGCTTACATAGAAAGGAACAAGCTTCGAATGACTCTGACACTGGGAACAGCCCTCATTGACATGTATGCGAAATGTGGGAACATGAACAAAGCCATGGAAGTCTTTTGGGGAATGAAAGAAAAGAATGTATACACTTGGAGTAGCGCCATTGGCGGGTTAGCCATGAATGGAGCTGGTGAGAAGTGTCTAGAGCTATTTTCCCTCATGAAACAAGATAGTGTTCAGCCCAATGAAATCACGTTCGTTTCAGTTTTAAGGGGCTGTAGTGTGGTTGGACTGGTTGAGGAAGGTCGTAAGCATTTTGAGTCAATGAGTAAAGTATATGGGATTGAGCCTCGGCTTGAGCATTATGGCTGCATGGTTGATTTATATGGTCGAGCTGGTCACTTAGATGAAGCTTTGAACTTCATCAATAGCATGCCCGTGAGGCCTCATGTGGGTGCATGGGGAGCACTACTTAATGCCTGTAAAATCTACAGAAATATGGAAATGGGTGAACTTGCATCGAGAAAGATAGTAGAGCTAGAGGCCAAGAATCATGGTGCCTATGTGCTGTTGTCTAACATTTACGCTGATTCCAAGGACTGGGACAGGGTGAGTAATGTGAGGCAGACAATGAATGTTAAAGGTGTGAGGAAGCAGCCTGGATGTAGCGTTATAGAGGTTGGTGGTGAAGTTCACGAGTTCTTCGTTGGGGATAAATCCCACCCAAGATATGCTGAAATCCAAGTAATGCTGGGAGAGATCTCTAGGAGGCTGAAATTATCAGGGTATGTAGCTAACACAAACCCTGTGTTTTTTGACATAGAAGAAGAAGAGAAAGAGGACGCTTTGTGTATGCATAGTGAGAAGATTGCCATTGCTTTCGGTTTGATCAGTTTGAGTCCAGATGTGCCCATTAGGATTGTGAAGAACCTCAGGGTTTGTTGGGATTGCCATGATGCCACAAAAATGATCTCCAAAGCTTTTAACAGAGAGATTGTTGTGAGGGATAGGAACAGATTCCATCATTTCAGAGATGGGGAGTGTTCTTGTAAGGGCTATTGGTGA 1806 0.4507 MVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0966 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Vvi1g0966 601 NCBIfam pentatricopeptide repeat 196 229 IPR002885 -
Vvi1g0966 601 NCBIfam pentatricopeptide repeat 165 192 IPR002885 -
Vvi1g0966 601 NCBIfam pentatricopeptide repeat 296 330 IPR002885 -
Vvi1g0966 601 Gene3D Tetratricopeptide repeat domain 32 155 IPR011990 GO:0005515
Vvi1g0966 601 Gene3D Tetratricopeptide repeat domain 156 265 IPR011990 GO:0005515
Vvi1g0966 601 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 267 496 - -
Vvi1g0966 601 Pfam DYW family of nucleic acid deaminases 509 601 IPR032867 GO:0008270
Vvi1g0966 601 FunFam Putative pentatricopeptide repeat-containing protein isoform A 158 259 - -
Vvi1g0966 601 Pfam E motif 411 473 IPR046848 -
Vvi1g0966 601 Pfam PPR repeat 368 393 IPR002885 -
Vvi1g0966 601 Pfam PPR repeat 167 191 IPR002885 -
Vvi1g0966 601 FunFam Putative pentatricopeptide repeat-containing protein isoform A 1 157 - -
Vvi1g0966 601 Pfam PPR repeat family 293 340 IPR002885 -
Vvi1g0966 601 Pfam PPR repeat family 193 240 IPR002885 -
Vvi1g0966 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Vvi1g0966 601 Pfam E+ motif 478 505 IPR046849 -
Vvi1g0966 601 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 192 538 IPR046960 GO:0003723|GO:0009451
Vvi1g0966 601 Gene3D Tetratricopeptide repeat domain 266 480 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0966 Vvi-Chr1 10638214 10640019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0966 5 601 Glycoside Hydrolase AT3G49170 34.926 6.83e-122 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0966 - - vvi:100853141 1229.93