Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0962 ATGGAAGAAAACGAAAGAGACAAAGGAGGAGAAGTAGAAATATGGAGTTGGGGTGCAGGCACCGATGGGCAGCTAGGCACGACCAGGCTTGAAGATGAACACCTACCTCAACTCCTAGATCTCCCCCGTTTCTCCTCCGCCGGACCCATCTCTCTCCTTGCCTGCGGCGGCGCTCATGTTCTTGCCTTGACCACCGATGGAAAGGTGGTGACATGGGGAAGAGGCACATCTGGTCAACTGGGTCATGGGGACATGGTTAGCAGCTTGCAACCCAAGCATGTCAAGTTGTTGGAGAGCTTTGTTATGACTCATGTTTCTGCTGGATGGAGCCACTCTGGCTTTGTTTCAGACACTGGGTGCTTGTTCACTTGCGGGGATGGTTCATTTGGCCAGCTTGGGCATGGTGATTGCAAGTCACATTGCTCTCCAGTGAAAGTGTCATACTTTGATTCAAAGCATGTTGATCAGATAGCATGTGGTATGCGCCATTCACTAGTCTTGTTGAAAGGCACAGGTCTTTCAGGAGATCAAGTATATGGGTTTGGGTCTGGAAAGCGTGGTCAACTGGGTGTTTCCATGGATAATACCAGATCAATAAGTGTACCTCAGGCTACTGTTGGGCTTGAAGGTGTTGAAATCATTAGTATTGATGCCAATGGGGATCATAGTGCAGCATTATCTGCTAATGGGCATTTGTACACCTGGGGAAGAGGATTTGGTAGCACTTCAGATGTTCACTGCCCTCGGTGTCTTCCTTCATCTTTGTGCTTCACCCAAGTTGCTCTTGGATGGAATCACATGTTAGTATTAACAGGTGGAGGGGAAGTGTTTATGCTTGGTGGCAACCGCCATGGAGTCCTTGGTGATCCTCAAAAAGGAAGCCAGGTGAAGCATTTATCTGAAGAATCAAGAGAAGAAAATCTGGAGAAAGTACAGGGTCTTGATGGATTAAATGTTGTGCAGATTGCGGCTGGAGCTGAGCACTCAGCCCTAGTAACAGAGAACAGGGTGATAAAGACATGGGGTTGGGGTGAACACGGTCAGCTTGGCTTAGGAAATACATATGATCAAATTAGCCCCCAGGCAGTACGTCTAGGCCACAGGCTTCCAGGCCAGCATACCATGATCAAAGTATATTGTGGAAGTGGGTTTACATTTGCCATAAAAGCAGTTATCCCATCTCAGACCTGA 1191 0.4803 MEENERDKGGEVEIWSWGAGTDGQLGTTRLEDEHLPQLLDLPRFSSAGPISLLACGGAHVLALTTDGKVVTWGRGTSGQLGHGDMVSSLQPKHVKLLESFVMTHVSAGWSHSGFVSDTGCLFTCGDGSFGQLGHGDCKSHCSPVKVSYFDSKHVDQIACGMRHSLVLLKGTGLSGDQVYGFGSGKRGQLGVSMDNTRSISVPQATVGLEGVEIISIDANGDHSAALSANGHLYTWGRGFGSTSDVHCPRCLPSSLCFTQVALGWNHMLVLTGGGEVFMLGGNRHGVLGDPQKGSQVKHLSEESREENLEKVQGLDGLNVVQIAAGAEHSALVTENRVIKTWGWGEHGQLGLGNTYDQISPQAVRLGHRLPGQHTMIKVYCGSGFTFAIKAVIPSQT* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0962 396 MobiDBLite consensus disorder prediction 1 20 - -
Vvi1g0962 396 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 119 170 IPR000408 -
Vvi1g0962 396 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 67 118 IPR000408 -
Vvi1g0962 396 Gene3D - 6 238 IPR009091 -
Vvi1g0962 396 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 336 391 IPR000408 -
Vvi1g0962 396 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 157 167 IPR000408 -
Vvi1g0962 396 Pfam Regulator of chromosome condensation (RCC1) repeat 274 331 IPR000408 -
Vvi1g0962 396 Pfam Regulator of chromosome condensation (RCC1) repeat 14 63 IPR000408 -
Vvi1g0962 396 Pfam Regulator of chromosome condensation (RCC1) repeat 177 226 IPR000408 -
Vvi1g0962 396 Pfam Regulator of chromosome condensation (RCC1) repeat 340 388 IPR000408 -
Vvi1g0962 396 Pfam Regulator of chromosome condensation (RCC1) repeat 66 114 IPR000408 -
Vvi1g0962 396 Pfam Regulator of chromosome condensation (RCC1) repeat 119 167 IPR000408 -
Vvi1g0962 396 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 274 335 IPR000408 -
Vvi1g0962 396 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 322 332 IPR000408 -
Vvi1g0962 396 SUPERFAMILY RCC1/BLIP-II 13 169 IPR009091 -
Vvi1g0962 396 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 12 66 IPR000408 -
Vvi1g0962 396 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 104 388 - -
Vvi1g0962 396 Gene3D - 239 391 IPR009091 -
Vvi1g0962 396 PRINTS Chromosome condensation regulator RCC1 signature 157 173 IPR000408 -
Vvi1g0962 396 PRINTS Chromosome condensation regulator RCC1 signature 69 85 IPR000408 -
Vvi1g0962 396 PRINTS Chromosome condensation regulator RCC1 signature 331 352 IPR000408 -
Vvi1g0962 396 PRINTS Chromosome condensation regulator RCC1 signature 50 63 IPR000408 -
Vvi1g0962 396 PRINTS Chromosome condensation regulator RCC1 signature 263 281 IPR000408 -
Vvi1g0962 396 PRINTS Chromosome condensation regulator RCC1 signature 13 29 IPR000408 -
Vvi1g0962 396 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 176 229 IPR000408 -
Vvi1g0962 396 SUPERFAMILY RCC1/BLIP-II 174 388 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0962 Vvi-Chr1 10588539 10591702 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0962 - - vvi:100246710 821.617