Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0961 ATGCTCTCCTTCACTGTACCTTCTTGCCGTTTCCTTGTTTCAAGAGATTTGAATCTCTTCCCCACCTTTCCGTCCCTGGTTTTCTTGATTGACCCAGGAAAGGTGAGACAGAGAAAGCAGTTTCGGCGGCTCAGATTGGCGGGGACGAGGGGGATTGGGTCTTTGGCGAGAGGGGTTGTGAGGCGGTGTCAAGAGTGGGAGAGCGAAGGGGATTGGGGGTTGGAGGAGGAGATTTTGGAGTTCATGAAGAAATCTGAGAGACCAGAGGCGTTTCCCTCCAGGAAAGAGTTGGTTGATGGTGGGAGGATGGATTTGGTGGAGGCTATTGTTGAGAAAGGTGGGTGGTTATCCTTGGGTTGGGATTTGGATGCTGAGGAAGGGGTGCTTGATGATGATGATGATGATGATGGCCGCCATGTTACTGATTGGGATTTGATTATGCGGAAAGCAAATGATGGCGATTTGGTCTGTGGCGATGGCGGTGGTGAAGCCAATGATTTGGAGGTAGATGAAATTCGTGTTTCGGGGCTTTTAGAGGCCGATTCTTCTGATTTGGATTCAGCTTCTTCATCTGGTAGATCACTAGAAGTAGCAGCTGAGGATAATACAGGGATTGAGGGCATATTGAAAGGATTGGAGACACATAGAAATGTGACTTTTGGTGTCGGCATGAGAGAGAAAGGAAATGGGAGCATCTTAATGAACAACAATGGAGATGATTGGCATTCTGGAAATTCAACAAATGCGGACAGCTCTGGCCTTGGAAAAATCAGCAGACAGACATCATCCATTCACAACAAAGGCATAATCAAAGATTCAGGGGGGAAATATAGTCAGATGAGATCTTTTTCAGACCTTGATGGTTTAGGCAACTCACTTAAGTCTGAAATGTGGAGAACCTGGGGTGTTTACAGGGCAGGATTTTCAGTAATGGATGTTGAAGCTGCTGAAATTGCTTGCAACGAGGCTAGAATGGAAGAGGTGATTGATATTTCAAAAGATGAAATACTTGCAATATCAGAGGGGCATGATATTTCAAAAGAATTGAACTCTCATGGTAAAGAAGTCAACCACAGTGAGATACAAAGTCGCCTTCAAGATATGGAGTTGGAGCTTTCCTCTATACTTAGGGCATTGAAATCCACCAGTGACGGAATTGTTCCACTGGGAAATACAAGTTCCTCTGATGATTTGCAGAAGCTTTCTGATGCTTTGGAGTTCCAGGAAAATGAGATCATGAATTCCCAGGACATTTTGCGGTCATTACGAGCAAAGTTGGCAGTAGTAGAAGGAAAGATGGCCCTAGCCATAATTGATGCACAAAAGCTGGTGGAAGAGAAGCAGAAGAGGATTGGTGATGCTCATAGCACTCTACAACTTCTTCGTTCTTCTTGCATAGTTTGGCCTAATTCAGCTTCTGAGGTTCTTTTGGCAGGATCTTTTGATGGTTGGACCACCCAGAGAAGGATGGAGAGGTCAAGTACAGGGATTTTTTCATTGTGCCTCAGATTGTATCCGGGTAGATATGAGATCAAGTTCATTGTCGACGGTGTATGGAGGATTGATCCCCTTCGCCCACTTGTTCACAGTGATGGATACGAGAACAACCTTCTTATTATTACATAA 1626 0.449 MLSFTVPSCRFLVSRDLNLFPTFPSLVFLIDPGKVRQRKQFRRLRLAGTRGIGSLARGVVRRCQEWESEGDWGLEEEILEFMKKSERPEAFPSRKELVDGGRMDLVEAIVEKGGWLSLGWDLDAEEGVLDDDDDDDGRHVTDWDLIMRKANDGDLVCGDGGGEANDLEVDEIRVSGLLEADSSDLDSASSSGRSLEVAAEDNTGIEGILKGLETHRNVTFGVGMREKGNGSILMNNNGDDWHSGNSTNADSSGLGKISRQTSSIHNKGIIKDSGGKYSQMRSFSDLDGLGNSLKSEMWRTWGVYRAGFSVMDVEAAEIACNEARMEEVIDISKDEILAISEGHDISKELNSHGKEVNHSEIQSRLQDMELELSSILRALKSTSDGIVPLGNTSSSDDLQKLSDALEFQENEIMNSQDILRSLRAKLAVVEGKMALAIIDAQKLVEEKQKRIGDAHSTLQLLRSSCIVWPNSASEVLLAGSFDGWTTQRRMERSSTGIFSLCLRLYPGRYEIKFIVDGVWRIDPLRPLVHSDGYENNLLIIT* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0961 541 PANTHER PROTEIN PTST HOMOLOG 3, CHLOROPLASTIC 28 540 - -
Vvi1g0961 541 SUPERFAMILY E set domains 465 540 IPR014756 -
Vvi1g0961 541 Gene3D Immunoglobulins 462 541 IPR013783 -
Vvi1g0961 541 Coils Coil 391 425 - -
Vvi1g0961 541 CDD E_set_AMPKbeta_like_N 466 540 - -
Vvi1g0961 541 Pfam Glycogen recognition site of AMP-activated protein kinase 465 539 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0961 Vvi-Chr1 10581689 10587978 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0961 - - vvi:100251843 1021.92