Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0960 ATGTCTACTGTGGATGCCAAGCATCAAGCCTCTCCACTCACTTCTTCATGGTCGTCTTCACCCCCTCCCAAGTCCAAACCACTGGACAACGAACCCGAAAAGAGCAAACATGACGCCGTCGTTTCATCGGACGTCTCAGACGAAGGCCCCAGAAAGCCCGGTGGATGGAACTCCATGGTTTATATCTTAGGGAACGAGACATTTGAGAGGTTAGCCACGTTTGGATTGCTCGCCAACTTCATGGTATACTTGCTCAATGAGTTTCACTTGGACCAGGTGTACGCCACCAACGTCCTTAACATCTGGTCCGGAACAACCAACTTTGCACCCTTGGTTGGAGCCTTCATCTCCGATGCTTGTGTGGGCAGGTTTCGGACTATTGCTTTTGCCTCGTTTGCTTCTTTGCTGGGCATGGTGACTTTGACTCTGACGTCATGGATTCCTCAGTTGCATCCTCCATCATGCACAGAAGACCAGCAACAAAATGATCAATGCACTGGGCCCACATCAGCTCAAATGGGGATTTTGTTCCTGGGCCTAGGATTTCTAACCATAGGCACAGGTGGAATCAGGCCATGCAGCATACCATTTGGGGTGGACCAGTTTGATCCCACCACTGAACAAGGAAGAAGAGGGATTAACAGCTTCTATAATTGGTACTACACCTCATTTACATTGGTGCTGATGATAGCTCTCACTTTGGTTGTCTACATCCAAGACTCTGTCAGCTGGGTCTTAGGCTTTGGGATTCCTACATTGCTCATGGTGGGTTCCATCATCCTGTTCTTCCTCGGAACAAGGGTTTACGTGTACGTGAAGCCGGAGGGCAGTATATTTTCCGGCATTGCACGAGTTTTTGTTGCGGCTTACAAGAAGCGCCGGGTGAAGATTCCGGTGGAAGGAGAGAAGGAGGGTGCATACTATGATCCACCATTGACGAAGGGGAGTATAGTGGCCAAGCTCCCCTTCACCAAACGGTTCAGGTGGCTAAACAAAGCTGCTGTGATACTGGAGGGCGAGAAGGATGCCAATGGTTGCCCTTCAAATCAATGGAGGCTTTGCAGCATCCAGCAGGTTGAAGAAGTGAAATGCCTGCTAAAAATAATCCCAGTTTGGGCATCTGGTATCATTTGCTTCACTGCCATATCACAACAAGGAACATTCACTGTATCACAAGCCCTGAAAATGGATAGACACCTCGGACCCAAATTTCAAATTCCTGCAGGCTCACTCATAGTAATATCCATGCTTACAGTAGGGATATGGGTTCCGTTCTATGATCGTATCCTTGTACCCGCCCTCCAAAAAATCACTAAACATGAAGGAGGAATTACACTTCTCCAAAGAATGGGAATTGGCATTGTTTTCTCCATTCTGTCCATGGTGGTTTCAGGATTGGTCGAACGAGAGAGAAGGGCTTCTGCTATTCTGCAAGCCGGGCCTCATGGGATTGCACCTATGTCAGTCATGTGGCTAGCTCCTCAGCTCATCCTAATGGGCTTTGCTGAAGCATTCAATATAATTGGACAGATCGAATTCTATAACAAAGAATTTCCGGAGAACATGAGAAGTATTGCTAATTCTTTGTTCTTTTGCACTATAGCAGGGGCTAGCTACTTAAGCAGCTTAGTGGTGGTCATCGTTCATGATGTTACCGGAAAAGCTGGCCGATCGGCCTGGTTGACAAAGAATATTAACCAGGGAAAGGTTGATTATTACTATTACCTTCTAGCAGGAATGGGGGTTCTGAATTTGATATATTTTCTGTTTTGTGCTCGTCGATACCGTTACAAGAGTGGTCACGGCGTTACCGAAGAAGAACCCCATTTGGACCTTGAGCTTAATCAACTCAAGCACTAG 1860 0.471 MSTVDAKHQASPLTSSWSSSPPPKSKPLDNEPEKSKHDAVVSSDVSDEGPRKPGGWNSMVYILGNETFERLATFGLLANFMVYLLNEFHLDQVYATNVLNIWSGTTNFAPLVGAFISDACVGRFRTIAFASFASLLGMVTLTLTSWIPQLHPPSCTEDQQQNDQCTGPTSAQMGILFLGLGFLTIGTGGIRPCSIPFGVDQFDPTTEQGRRGINSFYNWYYTSFTLVLMIALTLVVYIQDSVSWVLGFGIPTLLMVGSIILFFLGTRVYVYVKPEGSIFSGIARVFVAAYKKRRVKIPVEGEKEGAYYDPPLTKGSIVAKLPFTKRFRWLNKAAVILEGEKDANGCPSNQWRLCSIQQVEEVKCLLKIIPVWASGIICFTAISQQGTFTVSQALKMDRHLGPKFQIPAGSLIVISMLTVGIWVPFYDRILVPALQKITKHEGGITLLQRMGIGIVFSILSMVVSGLVERERRASAILQAGPHGIAPMSVMWLAPQLILMGFAEAFNIIGQIEFYNKEFPENMRSIANSLFFCTIAGASYLSSLVVVIVHDVTGKAGRSAWLTKNINQGKVDYYYYLLAGMGVLNLIYFLFCARRYRYKSGHGVTEEEPHLDLELNQLKH* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0960 619 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 54 597 - -
Vvi1g0960 619 MobiDBLite consensus disorder prediction 27 45 - -
Vvi1g0960 619 Pfam POT family 124 561 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vvi1g0960 619 Gene3D MFS general substrate transporter like domains 28 601 IPR036259 -
Vvi1g0960 619 CDD MFS_NPF1_2 59 595 - -
Vvi1g0960 619 MobiDBLite consensus disorder prediction 1 51 - -
Vvi1g0960 619 SUPERFAMILY MFS general substrate transporter 71 599 IPR036259 -
Vvi1g0960 619 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0960 Vvi-Chr1 10547654 10551352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0960 51 618 Organic Solute Cotransporters AT1G69870 60.946 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0960 - - vvi:100250071 1213.36