Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0957 ATGGGAGCCAGCCACTCGTCTTCTTCAAAGTCATCTCGTGTCCTCACCTTCAATTCCTCAGCATCATGGAAGATACATTTTGAAGAAGCCAAAAGCACTGGCAAACTGATGGTTATCGATTTCTCGGCTACATGGTGTGGACCTTGCCGATTCATGGAACCCGTCATTAATGAGTTTGCTGAGAAATATACAGACGTGGAGTTCGTCAAGATTGATGTGGACGAGTTGTCGGATGTGGCTCAAGAATTTGGAGTGCAGGGAATGCCAACATTCTTACTGATCAAGAGAGGAACAGAAGTTGATAAAGTGGTGGGAGCCAAGAAGGAAGAACTCCAGAAGAAGATCGAGGCTCACAGGAAAAATTGA 366 0.4536 MGASHSSSSKSSRVLTFNSSASWKIHFEEAKSTGKLMVIDFSATWCGPCRFMEPVINEFAEKYTDVEFVKIDVDELSDVAQEFGVQGMPTFLLIKRGTEVDKVVGAKKEELQKKIEAHRKN* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0957 121 ProSiteProfiles Thioredoxin domain profile. 6 120 IPR013766 -
Vvi1g0957 121 PRINTS Thioredoxin family signature 37 45 - -
Vvi1g0957 121 PRINTS Thioredoxin family signature 84 95 - -
Vvi1g0957 121 PRINTS Thioredoxin family signature 45 54 - -
Vvi1g0957 121 PANTHER THIOREDOXIN 14 116 - -
Vvi1g0957 121 FunFam Thioredoxin 13 120 - -
Vvi1g0957 121 Gene3D Glutaredoxin 2 121 - -
Vvi1g0957 121 CDD TRX_family 26 116 - -
Vvi1g0957 121 ProSitePatterns Thioredoxin family active site. 38 56 IPR017937 -
Vvi1g0957 121 SUPERFAMILY Thioredoxin-like 26 119 IPR036249 -
Vvi1g0957 121 Pfam Thioredoxin 28 116 IPR013766 -
Vvi1g0957 121 NCBIfam thioredoxin 27 117 IPR005746 GO:0015035
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0957 Vvi-Chr1 10422717 10423304 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0957 K03671 - vvi:100246832 237.654