Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0955 ATGGTTCTCGCAGCTGTAATAGCTCCACCTTCCCATCTTCCCCACGCCATCAGCAACAGCGACTCCTTCACCCATCACCGCCGCCTTCTCCTCTTCCTAAATTCATGCACCTGCATTTCTCAGCTCAAGCAACTTCACGCCCAGACAATTCGGACCACATCTTCCCACCATCCAAACACCTTCTTTCTTTACAGTCGGATTTTGCATTTCTCCTCCTTACATGATCTCCGTTACGCGTTTCGGGTTTTCCATCAAATTGAGAACCCCAATTCGTTCATGTGGAACGCCCTCATCAGGGCCTGTGCACGAAGCACTGACCGCAAACAACATGCCATTGCGCTTTATCACAGAATGTTGGAGCAAGGAAGTGTTATGCAAGATAAGCACACTTTCCCCTTTGTTCTCAAGGCTTGTGCTTACTTGTTTGCTCTATCAGAAGGGGAACAGATCCATGCCCAGATTTTGAAACTTGGATTTGATTCAGACGTTTATATTAATAACAGTTTGGTCCATTTCTATGCCACGTGCGACCGTTTGGACTTTGCAAAGGGGGTGTTTGATAGAATGTCTGAGAGAAGTTTGGTTTCATGGAACGTTGTGATTGACGCGTTTGTTCGATTCGGTGAGTTTGATGCTGCATTAAATTTATTCGGCGAGATGCAGAAGTTTTTTGAACCGGATGGGTATACCATTCAGAGTATCGCAAATGCTTGTGCTGGTATGGGGTCTTTGTCTTTGGGGATGTGGGCTCATGTTTTTCTGTTGAAAAAGTTTGACGCTGATAGAGTTAATGATGTTTTGTTGAACACTTCCTTGGTGGATATGTATTGCAAATGTGGGTCATTAGAACTTGCTCTGCAACTCTTTCACAGAATGCCTAAGCGTGATGTAACCTCATGGAATTCGATGATTCTAGGATTCTCCACCCATGGCGAGGTGGCGGCCGCATTGGAATATTTTGGTTGCATGGTCAGAACGGAAAAGTTGATGCCCAATGCCATCACGTTTGTAGGTGTCTTGAGTGCGTGTAATCACGGAGGCTTGGTTAGTGAGGGCCGCAGGTATTTTGATGTGATGGTAACGGAGTACAAAATTAAACCTGAATTAGAGCACTATGGCTGCCTGGTAGATCTTCTTGCGCGTGCTGGGCTTATTGATGAAGCCTTAGATGTTGTGTCAAACATGCCCATGAGACCAGACTTAGTCATTTGGAGGAGTCTTCTGGACGCTTGTTGCAAGCAAAATGCAGGTGTTGAGCTAAGTGAAGAAATGGCCAGACGAGTCCTTGAGGCAGAAGGGGGTGTTTGTAGCGGTGTTTATGTGCTGCTGTCCCGAGTATATGCCTCAGCTAGCAGGTGGAACGATGTTGGGATGGTTAGGAAACTGATGACTGATAAGGGTGTAGTAAAAGAGCCTGGATGTAGTTCAATAGAGATAGACGGTGTCGCCCATGAATTTTTTGCAGGGGACACATCTCATCCTCAAACTGAAGAAATATATTCAGCTCTGGATGTGATTGAAGAGAGGGTGGAAAGGGTAGGGTATTCCCCCGACTCTTCACAAGCGCCCATGGTTGATGAGACCATTGATGGAAAACAATACTCACTTAGGCTGCATAGTGAGAGACTTGCCATTGCCTTTGGCCTATTGAAGACAAAACCAGGCATGCCCATTCGCATTTTTAAAAACCTTCGAGTCTGCAATAACTGTCACCAGGTGACTAAATTAATCTCTAGGGTATTTAACAGAGAGATAATTGTGAGAGATCGTATTAGATTCCATCACTTCAAAGATGGTGCCTGTTCCTGCATGGATTATTGGTGA 1824 0.4534 MVLAAVIAPPSHLPHAISNSDSFTHHRRLLLFLNSCTCISQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0955 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 223 IPR002885 -
Vvi1g0955 607 FunFam Pentatricopeptide repeat protein PPR986-12 270 485 - -
Vvi1g0955 607 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 222 544 IPR046960 GO:0003723|GO:0009451
Vvi1g0955 607 Gene3D Tetratricopeptide repeat domain 270 484 IPR011990 GO:0005515
Vvi1g0955 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Vvi1g0955 607 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 125 IPR002885 -
Vvi1g0955 607 Pfam DYW family of nucleic acid deaminases 514 607 IPR032867 GO:0008270
Vvi1g0955 607 FunFam Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial 22 141 - -
Vvi1g0955 607 Pfam E motif 417 478 IPR046848 -
Vvi1g0955 607 Gene3D Tetratricopeptide repeat domain 143 248 IPR011990 GO:0005515
Vvi1g0955 607 FunFam Pentatricopeptide repeat-containing protein At2g36730 146 244 - -
Vvi1g0955 607 NCBIfam pentatricopeptide repeat 270 297 IPR002885 -
Vvi1g0955 607 NCBIfam pentatricopeptide repeat 195 222 IPR002885 -
Vvi1g0955 607 NCBIfam pentatricopeptide repeat 93 124 IPR002885 -
Vvi1g0955 607 Gene3D Tetratricopeptide repeat domain 30 141 IPR011990 GO:0005515
Vvi1g0955 607 Pfam PPR repeat 167 192 IPR002885 -
Vvi1g0955 607 Pfam PPR repeat 92 122 IPR002885 -
Vvi1g0955 607 Pfam PPR repeat 371 396 IPR002885 -
Vvi1g0955 607 Pfam PPR repeat 270 296 IPR002885 -
Vvi1g0955 607 Pfam PPR repeat 299 325 IPR002885 -
Vvi1g0955 607 Pfam PPR repeat 195 222 IPR002885 -
Vvi1g0955 607 Pfam E+ motif 484 504 IPR046849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0955 Vvi-Chr1 10409284 10411107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0955 20 607 Glycoside Hydrolase AT3G49170 37.688 7.53e-132 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0955 - - vvi:100253661 1234.55