Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0954 ATGGAGTTGTTCCGTACAGCCAAAGCCGTCACACTCCGGAGCCACCTAGACAAGTACCTGGTCGCTGACGACGACAAGGAAACGGTTCGCCAGAGCCGAAATGGTTTGTCCCGGAGAGCCAAATGGCTGGTCGAAGGCAGCGGCCATGTCATCCGCCTCAAGAGCTGCCACGGCCGCTACCTCACGGCCTCCGACACGGCCTATCTTCTAGGTATGACTGGGAAAAAGGTGACTCAGACGGTGCCGGGGAATACATCGGACGCGTTAATTGAGTGGGAGCCAATACGGGATGGGTTTCAGGTGAAGTTCAAGACTCGGGGTGGGAAATTTTTGCGAGCAAACGGAGGGACGCCACCGTGGAGAAACTCGGTTACTCACGATTACCCTAACAGCAGTGCAACACGGAACTGGATTCTTTGGGACGTGGAACCTGTGGAAGTGCCGGAAGTTGATCCAGTGGCGGACTACCTATCCTCGCTGTCGAGCTTTTCTTCGATTTCCGATGATCTCTTTGGTTCGGAGCCGCCGTCGCCGATGTCGATAACGGCCACCGAGCCATTCGGCCTGTCTTCGAAGAGGATCGCAATGGAGTTGTTTCACAACGCCAAGGCCGTTCGCCTCCGTAGCCATCACGACAAGTACCTGCTGGCCGACGACGACGAAGAGTCCGTTATCCAAGATCGGAGCGGCTCATCCAAGACTGCGCGATGGACCGTGGAGCTGGTCAAAGACGCCGACAACATCATCCGCCTCAGGAGCTGCTTTAACAAGTACCTTACCGCTTCCAACCAACCCTTCCTCTTGGGCATGACTGGTCGCAAAGTCCTCCAGACTCGCCCTGGGAGGCTTGACTCCTCCGTCGAGTGGGAACCCGTAAAAGAGGGCAACCGAATCAAGCTCAGAACTCGCTACGGTAATTTCCTCCGAGCCAACGGAGGGCTGCCGCCGTGGAGAAATTCGGTGACCCATGATGTTCCTCATAGAACGGCTACCCAAGATTGGATCCTTTGGGTTGTCGATATTGTTGAAATTCAGATTCAGTCTCCCAATGCTAAACCCCCGCTCCAATCCCTCTCCCATACGGATTCTTTTGCGAGCGCATCTGATTCGAGTTCGCCTTCCTCCGTATCATTACACCCTGCCAGTTTTTCAAGACAAGAGTCCAATGATTCCTTGGAGAATTCTCCCCCAAAAACTGAGGGCAGGACCATATACTACCATGTTGCTGATGACAATGGCAATGTGGACGACTCTGCGGGAGGGCACTATTTCACACTGAAGGAAAATGGGGTTTTTGAATTGACTCGCAGATTGGAGGAAGAGACGGGGTTAGAGGATATCATTGTCTGTTCTCGGAGTAACTTGAATGGAAAGCTTTATCCCCTGCGCTTGCAACTTCCTCCAAACAATGCAACTATGCATGTAATTGTAATCCAAGCATCCTCAAAAGCTGCAAGAAGTTTTGCAAAACCTGGGATCCCATGA 1485 0.5293 MELFRTAKAVTLRSHLDKYLVADDDKETVRQSRNGLSRRAKWLVEGSGHVIRLKSCHGRYLTASDTAYLLGMTGKKVTQTVPGNTSDALIEWEPIRDGFQVKFKTRGGKFLRANGGTPPWRNSVTHDYPNSSATRNWILWDVEPVEVPEVDPVADYLSSLSSFSSISDDLFGSEPPSPMSITATEPFGLSSKRIAMELFHNAKAVRLRSHHDKYLLADDDEESVIQDRSGSSKTARWTVELVKDADNIIRLRSCFNKYLTASNQPFLLGMTGRKVLQTRPGRLDSSVEWEPVKEGNRIKLRTRYGNFLRANGGLPPWRNSVTHDVPHRTATQDWILWVVDIVEIQIQSPNAKPPLQSLSHTDSFASASDSSSPSSVSLHPASFSRQESNDSLENSPPKTEGRTIYYHVADDNGNVDDSAGGHYFTLKENGVFELTRRLEEETGLEDIIVCSRSNLNGKLYPLRLQLPPNNATMHVIVIQASSKAARSFAKPGIP* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0954 494 SUPERFAMILY Actin-crosslinking proteins 200 342 IPR008999 -
Vvi1g0954 494 SUPERFAMILY Actin-crosslinking proteins 5 146 IPR008999 -
Vvi1g0954 494 Gene3D - 204 324 - -
Vvi1g0954 494 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 196 482 - -
Vvi1g0954 494 Pfam Domain of unknown function (DUF569) 196 337 IPR007679 -
Vvi1g0954 494 Pfam Domain of unknown function (DUF569) 1 140 IPR007679 -
Vvi1g0954 494 MobiDBLite consensus disorder prediction 351 398 - -
Vvi1g0954 494 FunFam BnaC05g19630D protein 200 340 - -
Vvi1g0954 494 MobiDBLite consensus disorder prediction 351 400 - -
Vvi1g0954 494 FunFam BnaC05g19630D protein 5 143 - -
Vvi1g0954 494 Gene3D - 5 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0954 Vvi-Chr1 10402444 10407330 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0954 - - vvi:100257102 949.503