Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0940 ATGATTGGTTCTCTCACCAACCTTTTCCTGTTTTATCAAATATGGCTGGGGCTGCTACTGCTGCTGCCTTGTCCTTCTTCTTCACTCCCCTTGTGTACTGACTTGAGGGCTCCCCTCGTTCCAAAGAAGCCTCTTGCCTTTTGTCCTTATAATGGGAGTGTGTGCTGTGACTCAGCCAAAGATCTGCAACTGCAGAAACAATTTCAAGCAATGAATATCTCTGATGAGGGCTGTGCTTCTCTTATGAAATCAATCCTCTGTGCGACATGTGATCCGTTCTCAGCAGAGCTATTCAAGGTACAATCGGGGCCTCGTCCAGTTCCTGTTCTTTGCAACTCCACTGATTCAGGGAACTCATCCATGTCAAAACAGGGTACAAGTAGCTTTTGTTCAAATGTCTGGGATGAATGCCAAAATGTTTTCATCTCAAATTCTCCCTTTGCTCCTTCATTGCAAGGTAGAGGTGGAGTATCAGTTAATTCCTCCGCTTCCAAGCTAACCGAACTCTGGCAGTCCAAAAGTGTTTTCTGTGATGCCTTCGGTGGTTCTTCTGATAATGGATCAATATGTTTTGATGGTGAGGCAGTTTCACTTGAAAATACTGAAACTATTGTTCCCCCTAAGGGCATGTGCCTTGAGAAAATTAGCAATGGATCTTACATCAATATGGTTGCTCATCCTGATGGCTCTAATAGAGCCTTCTTCTCTAGCCAAGCGGGTAAAATTTGGTTGGCCTCTGTTCCCGAACAGGGTTCAGGAGGAACATTGGAACTTGATGAATCTGATCCTTTTGTAGATATAACAGACCTTGTTCTTTCTGATCCTAGAGCTGGGATGATGGGTATGGCTTTTCATCCAAACTTTGCCCATAATGGACGCTTCTTTGCTTCATACAATTGTGATAAGGTTCAATCACCTGTATGCTCGGGAAGGTGTTCATGTAATTCAGATGTGAACTGTGATCCTTCAAAGATAGATCCTTCAAGTGGAGTTCAGCCGTGCCAGTATCATGCTGTTGTTGCAGAGTTCACCGCAAATGGGACTGCATCTGACCCTTCCTCGGCAACAAGTGCCAAACCATCAGAAATGAGAAGAATATTCACAATGGGCCTCCCATTTACATCTGATCATGGTGGCCAGATCCTGTTTGGACCTGCTGATGGGTACTTATACTTGATGATGGGGGATGGTGGGAGCAAAGGTGATCCATATAATTTTGCCCAAAACAAGAAATCATTGCTTGGAAAGATCATGAGGCTTGACATAGACAACATACCAAGTGGAGAAGAAATAGATGAACTTGGTTTGTGGGGGAACTATTCAGTCCCTCGAGATAATCCTTATTCTGAAGATAAGGAATTGGAGCCTGAAATTTGGGCCCTAGGATTAAGAAATCCTTGGCGTTGCAGCTTTGATTCAGAAAGGCCTGAATACTTCCTTTGCGGTGATGTTGGGCAGGATCAATATGAAGAGGTGGATATTATTACCAAGGGTGGAAACTACGGGTGGCGTGTTTATGAAGGTCCCCTTCTCTTTACCCCTGAACAGACTCCTGGGGGAAATACCTCTGCTAACTCAATAAACCCGATTTTCCCTATATTGGGATATAAGCACTCAGATGTCAATCCAAAACTTGGATCAGCAGCAATGTCAGGAGGGTATTTCTATCGCTCCATGACTGATCCATGCATGTATGGAAGTTACTTGTATGGAGATTTGTATGCTAGTTATATATGGGCAGCTGCTGAGAGACCGGAAGGCAGTGGAAACTTTACTGGTACCTCTATTCCTTTCAGTTGTTCTAGTGACTCTCCCATACAGTGTGGCTCTGTGCCAGAAAGTTCTCTTCCTGCATTGGGATACATATACTCATTTGCAGAGGATAACAGGAAAGACATTTTCATTCTAACCAGCAATGGCGTGTTCAGAGTAGTTCGTCCAAGCCGATGCAATTATACTTGCTCCAAGGAAACTGTGACAGCAGCCAGCCCAAGTCCCCCCAGCCCAAGTCCCCCCACTTCCAACTATGCTAACCAGTTGACTGGTGCAGATAAGGAGCTTCGGCTCTTCCTTTCTTCATTGTTACTTCTGCTGGGATATATATTCTGA 2109 0.4448 MIGSLTNLFLFYQIWLGLLLLLPCPSSSLPLCTDLRAPLVPKKPLAFCPYNGSVCCDSAKDLQLQKQFQAMNISDEGCASLMKSILCATCDPFSAELFKVQSGPRPVPVLCNSTDSGNSSMSKQGTSSFCSNVWDECQNVFISNSPFAPSLQGRGGVSVNSSASKLTELWQSKSVFCDAFGGSSDNGSICFDGEAVSLENTETIVPPKGMCLEKISNGSYINMVAHPDGSNRAFFSSQAGKIWLASVPEQGSGGTLELDESDPFVDITDLVLSDPRAGMMGMAFHPNFAHNGRFFASYNCDKVQSPVCSGRCSCNSDVNCDPSKIDPSSGVQPCQYHAVVAEFTANGTASDPSSATSAKPSEMRRIFTMGLPFTSDHGGQILFGPADGYLYLMMGDGGSKGDPYNFAQNKKSLLGKIMRLDIDNIPSGEEIDELGLWGNYSVPRDNPYSEDKELEPEIWALGLRNPWRCSFDSERPEYFLCGDVGQDQYEEVDIITKGGNYGWRVYEGPLLFTPEQTPGGNTSANSINPIFPILGYKHSDVNPKLGSAAMSGGYFYRSMTDPCMYGSYLYGDLYASYIWAAAERPEGSGNFTGTSIPFSCSSDSPIQCGSVPESSLPALGYIYSFAEDNRKDIFILTSNGVFRVVRPSRCNYTCSKETVTAASPSPPSPSPPTSNYANQLTGADKELRLFLSSLLLLLGYIF* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0940 702 FunFam HHIP-like 1 214 639 - -
Vvi1g0940 702 SUPERFAMILY Soluble quinoprotein glucose dehydrogenase 209 533 IPR011041 -
Vvi1g0940 702 PANTHER HEDGEHOG-INTERACTING PROTEIN 61 665 - -
Vvi1g0940 702 Gene3D - 216 648 IPR011042 -
Vvi1g0940 702 Pfam Glucose / Sorbosone dehydrogenase 225 579 IPR012938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0940 Vvi-Chr1 10284236 10289167 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0940 - - vvi:100245038 1377.46