Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0938 ATGAAGAGGCATGTTATCTCCTTTTCACGACATTGTTTTCAAGTCTTCTCTTATCATTCCCACTTGGATCCTGCTCTCAATCGTTTATCCTTCTTTAGAAGATGCTTTAGTGAAAAACTTTCTTCCTTTGATTCTACCACCAGAAATTTTCCTGATTATTCCCCAAAGAAACCTATCATTCAAGATTCTGAACTGGTTCATCGTATTTCCATTGCAATTAAGCAACGCCGCTCTGAGCCTCTCCGTCGTGTTCTAAAGCCCTATGAATCCAAATTCCGGGCTGATCACCTCATTTGGGTTCTTATGAACATTAAGAATGATTACAGATTGGTTTTAAGTTTCTTTGAGTGGGCCTGCCTACGCAGAGACCCATCACTGGAAGCACGTTGCATTGTTGCTCAAATAGCAACGGCTTCAAAGGATCTGAAAATGGCTCGCAAGCTCATCCAGGATTTTTGGGTCAATCCCAATTTGGATGTTGGTGTTTCTTTTGGTCATTTTGTTGAGCAGTTGATATACACTTACAAGGACTGGGGTTCAGACCCCCGTGTCTTTGATATTTTCTTTCAGGTCCTTGTTGAAGCTGGGATGCTCGATGAAGCAAGAAAACTTTTTGATAAGATGCTGAATTATGGGTTGCTCATCTCTGTTGACTCTTGTAATTTATTTATTTCTCATTTATCAGAGGATCTTGACGGGATCAAAATTGCTTTAAAGGTTTTCGTGGAATTTCCTGAAGTGGGTGTATGTTGGAATACTGCATCATATAATATTATAACACATTCTCTTTGTCAATTAGGGAGAGTGGTAGAAGCTCACCAGCTTCTCTTGCAAATGGAGCTGAGAGGCTGTATACCTGATGTTATAAGTTATAGTACTGTAATTAATGGATATTGTCAAGTTGGGGAGCTCCAAAGGGTTTTGAAGCTCATAGAGGAAATGCAAATAAAAGGATTGAAGCCAAACCCATATACTTACAATGGCGTAATCCTTCTTCTGTGTAAGACTGGTAAAGTAGCAGAAGCAGAAAGGGTCCTTAGGGAGATGATTAGTGAGGGAATTGCCCCAGATGGTGTCATCTACACAACATTAATTGATGGTTTCTGCAAGCTTGGGAATGTCTCATCGGCATATAGGCTGTTTGATGAAATGCAGAAGCGAAAAATTAGTCCTGACTTTATAACATATACTGCTGTTATATGTGGACTATGTCAAACAGGAAGGGTGATGGAAGCAGATAAGCTCTTCCATGAAATGGTCTGCAAGCGGTTGGAACCAGATGAAGTTACCTACACAGCACTTATTGATGGTTATTGCAAAGAAGGGAAGATGAAAGAAGCCTTTTCCCTTCACAACCAAATGCTTCAGATGGGACTGACCCCAAATATTGTCACTTACACTGCACTGGCTGATGGTCTTTGCAAATGTGGGGAGGTTGATACAGCAAATGAGCTTCTTCATGAGATGTGCAGAAAGGGTCTTGAACTGAATATCTACACTTACAACTCACTTGTTAATGGTCTCTGTAAAGCAGGAAATATAGATCAAGCAGTAAAGCTAATGAAAGATATGGAAGTGGCGGGGTTCCATCCTGATGCTGTTACTTATACTACTCTAATGGATGCTTATTGCAAGTCAAGAGAGATGGTTAGGGCCCATGAGCTCCTGCGTCAGATGCTGGATAGAGAGCTTCAACCCACAGTTGTTACATTCAATGTGCTAATGAATGGGTTTTGTATGTCAGGGATGCTAGAAGATGGTGAGAAGCTACTAAAATGGATGCTGGAGAAGGGTATTATGCCAAATGCCACCACCTACAATTCTCTTATAAAACAGTACTGCATTAGAAATAACATGCGTGCCACAACTGAAATTTATAGAGGAATGTGTGCCAAAGGAGTGGTGCCTGATGGCAACACCTATAACATTTTGATAAAAGGGCATTGTAAAGCAAGGAATATGAAAGAGGCATGGTTTTTACACAGAGACATGGTTGGGAAGGGATTTAATCTCACAGTTAGTTCCTACAATGCTCTCATCAAGGGTTTTTACAAGAGGAAGAAATTTTTGGAGGCAAGGGAACTGTTTGAGCAAATGAGAAGAGAAGGCCTGGTTGCAGATAGGGAAATATATAACATATTTGCTGATATAAATTATGATGAAGGGAAAATGGAGTTGACTCTTGAGCTTTGTGATGAAGCAATAGAGAAATGTCTTGTGGGTGACATCCAAACTAAGAACACATAA 2247 0.4028 MKRHVISFSRHCFQVFSYHSHLDPALNRLSFFRRCFSEKLSSFDSTTRNFPDYSPKKPIIQDSELVHRISIAIKQRRSEPLRRVLKPYESKFRADHLIWVLMNIKNDYRLVLSFFEWACLRRDPSLEARCIVAQIATASKDLKMARKLIQDFWVNPNLDVGVSFGHFVEQLIYTYKDWGSDPRVFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTKNT* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0938 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Vvi1g0938 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 637 671 IPR002885 -
Vvi1g0938 748 FunFam Pentatricopeptide repeat-containing protein At5g39710 446 551 - -
Vvi1g0938 748 Gene3D Tetratricopeptide repeat domain 233 317 IPR011990 GO:0005515
Vvi1g0938 748 Pfam PPR repeat 255 284 IPR002885 -
Vvi1g0938 748 Pfam PPR repeat 189 213 IPR002885 -
Vvi1g0938 748 Gene3D Tetratricopeptide repeat domain 621 747 IPR011990 GO:0005515
Vvi1g0938 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Vvi1g0938 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 602 636 IPR002885 -
Vvi1g0938 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Vvi1g0938 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Vvi1g0938 748 FunFam Pentatricopeptide repeat-containing protein At5g39710 340 445 - -
Vvi1g0938 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Vvi1g0938 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Vvi1g0938 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Vvi1g0938 748 Gene3D Tetratricopeptide repeat domain 530 620 IPR011990 GO:0005515
Vvi1g0938 748 Gene3D Tetratricopeptide repeat domain 318 406 IPR011990 GO:0005515
Vvi1g0938 748 Gene3D Tetratricopeptide repeat domain 89 232 IPR011990 GO:0005515
Vvi1g0938 748 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 345 637 - -
Vvi1g0938 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Vvi1g0938 748 Pfam PPR repeat 632 665 IPR002885 -
Vvi1g0938 748 Pfam PPR repeat family 672 713 IPR002885 -
Vvi1g0938 748 Pfam PPR repeat family 426 475 IPR002885 -
Vvi1g0938 748 Pfam PPR repeat family 356 405 IPR002885 -
Vvi1g0938 748 Pfam PPR repeat family 566 614 IPR002885 -
Vvi1g0938 748 Pfam PPR repeat family 286 335 IPR002885 -
Vvi1g0938 748 Pfam PPR repeat family 497 545 IPR002885 -
Vvi1g0938 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Vvi1g0938 748 NCBIfam pentatricopeptide repeat 534 567 IPR002885 -
Vvi1g0938 748 NCBIfam pentatricopeptide repeat 429 463 IPR002885 -
Vvi1g0938 748 NCBIfam pentatricopeptide repeat 499 533 IPR002885 -
Vvi1g0938 748 NCBIfam pentatricopeptide repeat 675 707 IPR002885 -
Vvi1g0938 748 NCBIfam pentatricopeptide repeat 640 671 IPR002885 -
Vvi1g0938 748 NCBIfam pentatricopeptide repeat 359 392 IPR002885 -
Vvi1g0938 748 NCBIfam pentatricopeptide repeat 464 497 IPR002885 -
Vvi1g0938 748 NCBIfam pentatricopeptide repeat 184 215 IPR002885 -
Vvi1g0938 748 NCBIfam pentatricopeptide repeat 569 603 IPR002885 -
Vvi1g0938 748 NCBIfam pentatricopeptide repeat 394 428 IPR002885 -
Vvi1g0938 748 NCBIfam pentatricopeptide repeat 324 357 IPR002885 -
Vvi1g0938 748 NCBIfam pentatricopeptide repeat 289 322 IPR002885 -
Vvi1g0938 748 NCBIfam pentatricopeptide repeat 255 288 IPR002885 -
Vvi1g0938 748 NCBIfam pentatricopeptide repeat 605 637 IPR002885 -
Vvi1g0938 748 SUPERFAMILY TPR-like 393 597 IPR011990 GO:0005515
Vvi1g0938 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 567 601 IPR002885 -
Vvi1g0938 748 Gene3D Tetratricopeptide repeat domain 408 529 IPR011990 GO:0005515
Vvi1g0938 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Vvi1g0938 748 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 672 706 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0938 317 748 Glycosyltransferase AT1G05670 28.276 1.04e-57 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0938 - - vvi:100250172 1519.98