Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0936 ATGAAGCCCAAATGCCTTTCCATCACTTTCCTCTGCATTTCTCTCATCTTACTCCCTACCCTGATTTTATCCCAGTCTTGCCAAAGAACGTGTGGCAATCAACACCTCAAATATCCTTTTGGCAGTGGCCCTGGTTGCGGTGATCCACGCTTCCAGCCATATGTAACTTGTAGCCAAGAAAAGCTCACCTTTATAACCCACACGGGCTATTACACCATCACCAACATAGATTACAACTCTCAAGTTTTGTGTATCACAGATCCATCCATGTCCACTTGCTCTTGTGCACAGCCAAGCAAAGGCTTTGGCCTAGATTGGAATGCTCCATTCAGTTTTCATGACGGCAATGTCTTTGCTCTACTTGACTGCTCAATTACTTCATCACCTATTTACAAACCAGACGGCCTCTATGGTGGTGGAAACAGCACCCTGGTCCCTTTATGTGATAGCGAGGGTGCACCCATTTGCAGTCTCCTCTATTCTTGCAGACCAATCATCGTGCTCAACATCCCAATCTCCACATGCTGTGTTTACACGCCAGTTGATCTTGGGCCCTCATTTGAAATGGATTTGCAGAAGTTAAAGTGCACTTCATATTCCGGGTTTTATAGTTATAATGGCCAGGATTCTAACCCACAGAGTTGGAAATATGGAGTGGCACTAAAATATAAGTTCAGTATCAATAACGACTATCCGGGCGCATGTGCTGACTGCGAGAAGAGTAATGGAGTTTGTGGGTATACTGGAGATTATAATTCATTCATCTGCAACTGTCCTGGTGGGGTGAACACTACAGGGAATTGTTTCTTCTCGGCATATTGGAACAACGGTTTGAGGCCTCTTCCATGGCAAACGGGAATTTGGCTGATCTATTATCTGGCATTGATGGTTTGGATCTCGTAG 903 0.4485 MKPKCLSITFLCISLILLPTLILSQSCQRTCGNQHLKYPFGSGPGCGDPRFQPYVTCSQEKLTFITHTGYYTITNIDYNSQVLCITDPSMSTCSCAQPSKGFGLDWNAPFSFHDGNVFALLDCSITSSPIYKPDGLYGGGNSTLVPLCDSEGAPICSLLYSCRPIIVLNIPISTCCVYTPVDLGPSFEMDLQKLKCTSYSGFYSYNGQDSNPQSWKYGVALKYKFSINNDYPGACADCEKSNGVCGYTGDYNSFICNCPGGVNTTGNCFFSAYWNNGLRPLPWQTGIWLIYYLALMVWIS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0936 300 Pfam Wall-associated receptor kinase C-terminal 208 260 IPR032872 -
Vvi1g0936 300 Pfam Wall-associated receptor kinase galacturonan-binding 27 86 IPR025287 GO:0030247
Vvi1g0936 300 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Vvi1g0936 300 PANTHER WALL-ASSOCIATED RECEPTOR KINASE CARBOXY-TERMINAL PROTEIN-RELATED 7 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0936 Vvi-Chr1 10259338 10260346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0936 31 124 Receptor kinase-like Gene Family AT5G02070 35.354 1.25e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0936 - - vvi:100255341 644.425