Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0935 ATGAAGAGAGGAAAGTTCGATACACTGGTGCCAACGAGTCGGCTCAAATCGTTTAAAATTTTGGCGGGTCTGCTGTTTCTGTACTTGATTTTCATGAGTTTTGAAATCCCTCTAGTGCTTAGAACTGGGTTCGGATCGTTACCGGGTGATGGGTTTAACGGGTTTCTCGGTGACGCATTCTCTCAACAATTCATGCTGGAAAGCGAACAAGACATGGCGGAGAAAGATGCCCCAAGTCGACCCTCCTTTAGGGTTTCAAAGGGCTTGTCTCAGTCTTCGCGGTTTCGGGCCCCTGCGCGTCGAATGCGGGAGTACAAGAAAGTTTCTGGTTTGGCATTTCACGGGGGTCTTCTCAATAGTAAAGATGGCTATTCTGAGCTTCACAAGTCGGCCAAGCATGCGTGGGAAGTGGGGAAGACGCTTTGGGAGAAGCTGGATTCGGGAGAAATCCAAGTTGAGTCGAAGAGGAAGGCGCAGAATCAGTCGGAGTCGTGCCCACATTCAATTGCGCTATCTGGGTCGGAGTTTCAGGATCGAAATAAAATTATGGTGCTTCCCTGTGGATTGACGCTGGGATCACATATTACGGTTGTGGGGAAGCCGCATTGGGCACATGCTGAGTACGACCCGAAGATAGCGTTATTGAAAGATGAGGATCAGAGTGTGATGGTTTCCCAGTTTATGATGGAGTTGCAGGGATTGAAAACAGTGGATGGAGAGGACCCGCCTAGGATACTGCATTTCAATCCAAGGTTGAAGGGCGATTGGAGCGGGAAGCCGGTGATTGAGCAGAATACTTGTTATAGAATGCAATGGGGGTCAGCCCTTCGGTGTGAGGGGTGGAAATCAAGGGCGGATGAAGAAACCGTTGATGGGCAGGTGAAATGTGAGAAGTGGATTCGTGATGATGATAGTCATTCAGAAGAATCAAAGGCTACATGGTGGTTGAACAGGCTGATAGGGCGGACAAAGAAAGTGGCGATTGATTGGCCATATCCTTTTGCAGAGGAAAAGCTATTTGTTCTTACTGTGAGTGCAGGCTTGGAAGGTTATCACGTCAATGTTGATGGGAGGCATGTCACTTCTTTTCCCTATCGCACAGGATTTGTTCTTGAGGATGCCACTGGCCTATTTGTAAATGGGGACATTGATGTGCATTCTGTATTTGCTGCTTCTTTACCGGCATCACATCCAAGTTTTGCTCCTCAGTTGCATCTTGAGAAGTTGCCTAAATGGCAGGCCTCACCTCTTCCAGATGGACCTGTGGAGCTTTTCATTGGCATACTTTCTGCTGGCAATCACTTTGCTGAGCGGATGGCTGTGAGGAAATCTTGGATGCAGCATAACTTAGTCAAATCTTCTAAAGTTGTGGCTCGGTTCTTCATAGCATTGCATGGAAGAAAAGAAATAAACGTGGAGCTAAAGAAGGAAGCAGAGTATTTTGGTGATACTGTTATAGTTCCTTACATGGATAATTATGACCTTGTTGTGTTAAAGACTGTTGCAATCTGTGAATATGGGGCTCGCACTGCTGCTGCAAAGTATATCATGAAGTGTGATGATGACACGTTTGTCAGGGTGGATGCTGTGATCAAGGAAGCAAGGAAAGTCCATGAAGATAACAGTCTGTATGTGGGAAATATGAATTACTACCACAAGCCCCTGCGATATGGTAAATGGGCAGTGACTTATGAGGAATGGCCAGAAGAAGATTATCCACCCTATGCAAATGGGCCAGGTTACATTGTGTCATATGACATTGCAGAATTCATTGTTTCAGAGTTTGAAAAACACAAATTGAGACTGTTCAAGATGGAGGATGTGAGCATGGGAATGTGGGTGGAGCAGTTCAATAGTTCAATGCCAGTGCAGTATCTGCACAGTGTGAAGTTTTGCCAGTTTGGGTGCATTGAGGATTATTATACTGCACATTACCAGTCCCCGAGGCAGATGATTTGCATGTGGGAAAAATTGCAACAGCAAGGAAAGGCCCACTGCTGCAACATGAGATGA 2013 0.462 MKRGKFDTLVPTSRLKSFKILAGLLFLYLIFMSFEIPLVLRTGFGSLPGDGFNGFLGDAFSQQFMLESEQDMAEKDAPSRPSFRVSKGLSQSSRFRAPARRMREYKKVSGLAFHGGLLNSKDGYSELHKSAKHAWEVGKTLWEKLDSGEIQVESKRKAQNQSESCPHSIALSGSEFQDRNKIMVLPCGLTLGSHITVVGKPHWAHAEYDPKIALLKDEDQSVMVSQFMMELQGLKTVDGEDPPRILHFNPRLKGDWSGKPVIEQNTCYRMQWGSALRCEGWKSRADEETVDGQVKCEKWIRDDDSHSEESKATWWLNRLIGRTKKVAIDWPYPFAEEKLFVLTVSAGLEGYHVNVDGRHVTSFPYRTGFVLEDATGLFVNGDIDVHSVFAASLPASHPSFAPQLHLEKLPKWQASPLPDGPVELFIGILSAGNHFAERMAVRKSWMQHNLVKSSKVVARFFIALHGRKEINVELKKEAEYFGDTVIVPYMDNYDLVVLKTVAICEYGARTAAAKYIMKCDDDTFVRVDAVIKEARKVHEDNSLYVGNMNYYHKPLRYGKWAVTYEEWPEEDYPPYANGPGYIVSYDIAEFIVSEFEKHKLRLFKMEDVSMGMWVEQFNSSMPVQYLHSVKFCQFGCIEDYYTAHYQSPRQMICMWEKLQQQGKAHCCNMR* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0935 670 SMART Gal_bind_lectin_2 185 390 IPR001079 GO:0030246
Vvi1g0935 670 Gene3D - 179 389 - -
Vvi1g0935 670 CDD GLECT 185 389 IPR001079 GO:0030246
Vvi1g0935 670 FunFam Hydroxyproline O-galactosyltransferase 415 658 - -
Vvi1g0935 670 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 181 391 IPR001079 GO:0030246
Vvi1g0935 670 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 385 618 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vvi1g0935 670 FunFam Hydroxyproline O-galactosyltransferase GALT4 180 298 - -
Vvi1g0935 670 Pfam Galactoside-binding lectin 182 389 IPR001079 GO:0030246
Vvi1g0935 670 Pfam Galactosyltransferase 437 617 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vvi1g0935 670 Gene3D - 420 665 - -
Vvi1g0935 670 FunFam Hydroxyproline O-galactosyltransferase GALT2 305 389 - -
Vvi1g0935 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 184 389 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0935 Vvi-Chr1 10253870 10257755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0935 2 670 Glycosyltransferase AT1G74800 65.538 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0935 K20843 - vvi:100260423 1380.54