Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0912 ATGAACTCCCTTACTCTCCTCTCACATCCTCCGCACACCACGCTCCACTCTTCCACCCTCTCCACAGACAAAGCCTGTCCATTTCTCCAATCTCACTCCCATTCTCGAGCCCTAGGGTTTTGTTTCCCCAAACCGCTCCGCCCACCAGCTCAGATCTCATCTCGGTTTCGAATCTCATACAAGTTTCGACGCTCACTCTTTCCGGTGGAATCTCAACTATCGGATGTCGACGAGGACGATGATGACGATGACGATGACGACGAAGCCGCAGATGAATACGACGTCCCCGGTGAAGCTTTGGACGGAGTGGAAGATGAAATCGAAACATCGATGGCTACATCTGAGGCGCCTGCGTCTCGGTCTGATGAATTCAAGTGGCAGAGAGTGGAGAAGCTCTGCAACGAAGTCAGAGAGTTCGGCGAAGAGCTGATTGATGTCGAGGAACTCGCCTCCATTTACGACTTTCGAATTGACAAGTTTCAGAGGTTAGCAATTCAAGCGTTCTTAAGAGGTTCATCGGTTGTAGTTTCCGCCCCGACAAGCAGCGGTAAGACTTTGATTGCAGAAGCTGCAGCTGTTGCCACAGTATCCAGGGGAAGGAGATTATTCTACACAACTCCGCTTAAGGCATTATCGAATCAGAAATTCCGCGAGTTCCGTGAGACCTTCGGTGATAATAATGTTGGCCTTCTTACTGGAGATTCTGCAGTCAACAAAGATGCTCAAGTTTTGATTATGACCACAGAGATCCTGAGAAACATGTTATATCAGAGTGTTGGAATGGTTTCTTCTGGGAGTGGGCTTTTCCATGTGGATGTAATTGTTTTGGATGAAGTGCATTATCTAAGTGACATATATCGGGGTACGGTCTGGGAAGAGATAGTTATATATTGCCCAAAAGAAGTTCAACTTATTTGTCTATCAGCTACAGTTGCAAATCCAGATGAGCTGGCTGGTTGGATTAGTCAGATACATGGTAAAACTGAGTTGGTCACATCATCAAAGCGTCCTGTTCCATTGACTTGGCACTTTTCTACAAAGACTTCTTTGTTACCTCTTCTTGACGAGAAGGGAAAAAGCATGAATAGGAAGCTGTCTCTCAGTTATTTACAAAATTATGCTTCAGGAGATAACTCTTACAAGGATGAGAGATCTAGAAGAAGGAATTTAAAAAAACGTGAAAGTGACATGAGCTACAGCAGTTTTGCTAGCATCCATGGACAATCCTCTCTTTCAAAGAATGACATAAACACAATTCGTCGTTCACAAGTTCCTCAAGTTATGGATACATTATGGCACCTTAAGGCAAGGGATATGCTGCCAGCAATTTGGTTTATTTTTAGCAGGAAAGGATGTGATGCGTCTGTTCAGTATCTTGAAGATTGCAATCTCCTAGATGAGTCTGAAATGAGTGAGGTTGATCTGGCCTTGAAAAGGTTCCGTCTTCAGTATCCTGATGCTGTCAGGGAGTCTGCTGTAAAAGGCCTTCTGCAAGGGGTTGCTGCACATCATGCTGGATGTCTACCCCTGTGGAAATCATTTATAGAAGAGCTGTTTCAACGAGGACTTGTTAAGGTTGTCTTCGCTACAGAGACACTTGCTGCTGGAATCAATATGCCTGCTAGGACAGCTGTTATTTCATCTCTCAGCAAAAGGGGTGAAAGTGGACGTATTCAATTGAGCTCAAATGAACTGCTTCAAATGGCTGGGCGTGCTGGACGTAGAGGTATTGATGAAAGTGGACATGCGGTGCTTGTTCAGACCCCCTACGATGGTGCTGAAGAATGCTGCAAGCTTCTCTTTGCTGGGGTTGAACCTCTTGTTTCACAGTTTACTGCTTCATATGGAATGGTTCTGAATCTTCTTGCAGGTGCAAAAGTTACTCGTAGATTGAGTGAATCCAATGATTTGAAGGTTCTCCAAGCAGGACGAACTCTGGAAGAAGCTAGGAAGTTAGTTGAGCAAAGTTTTGGAAACTATGTTGGGAGCAATGTTATGCTTGCTGCAAAAGAGGAGCTTACAAAAGTAGAGAAAGAGATTGAGGTGTTGTCTTCAGAAGTTACTGATGATGCTATTGATAGGAAGAGCCGGAAGCTGTTATCGGAGATGGCTTATAATGAGATTGCTAATCTGCAGGAAGAATTAAGGGCAGAAAAACGCTTGAGAACTGAGTTACGAAGAAGGATGGAATTGAGAAGAATGTCTGCCTTGAAACTACTATTGAAGGAGTCAGAAAATGGACATTTGCCTTTTGTGTGTTTGCAATATAAAGATTCTGAGGATGTTCAACACTTAGTCCCTGCTGTCTATTTAGGGAAGGTTGATTCATTTGATGGTTCAAAAGTCAAGAACATGGTTTATACCAATGATTGTTTTGCACTAAATGCAGTAGTGACAGAGCTAAATGTTGATGATACTGACAGTCAACCCAATGGCAAACCATCTTATTATGTGGCTCTTGGTTCAGATAACTCTTGGTATCTATTTACAGAAAAGTGGATTAAAACAGTTTATAGGACGGGCTTTCCTAATGTTGCCTTAGCTCAAGGTGATGCCTTGCCTCGGGAAATTATGAGGGCACTTCTTGATAAGGCAGACATACAGTGGGAGGAGCTTGCTAAGTCTGAACTGGGAGGTTTATGGTGTATTGAAGGATCCCTAGAGACATGGTCTTGGAGTTTAAATGTGCCAGTTTTGAGTAGCCTTTCTGAAGATGATGAGGTGTTAAAAATGTCTCAAGCATACTATGAAGCTGTAGAGTGCTACAAGGAGCAAAGAAATAAAGTTTCACGTTTGAAGAAAAAGATAGCACGCACGGAAGGGTTTAAAGAGTACAAGAAGATTATAGACATGAGTAAGTTCACTGAGGAAAAGATTAAACGCTTGAAGGCTAGATCAAATCGTTTGAGTAGTCGAATAGAGCAAATTGAACCATCTGGTTGGAAGGAGTTTCTGCAGGTCAGCAATGTCATACATGAAACTAGGGCATTGGATATCAATACACATATAATATTTCCTCTTGGGGAAACTGCAGCTGCAATTCGGGGAGAAAATGAACTCTGGCTTGCAATGGTTCTTCGGAGTAAAGTCTTACTGGGTTTAAAACCTGCACAACTTGCTGCAGTATGTGGAAGTTTAGTTTCTGAAGGGATCAAAGTTCGTCCTTGGAAAAACAACAGCTATATATATGAAGCTTCCACTACTGTAATCAATGTCATCAGTCTTTTGGATGAGCAAAGAAACTCCCTTTTGCAACTTCAAGAAAAACATGATGTACAGATACCTTGCTGTTTGGATAGCCAATTTTCTGGAATGGTTGAAGCCTGGGCATCTGGTTTAACTTGGAGGGAAATTATGATGGATTGTGCAATGGATGAGGGAGACCTAGCTCGCCTCTTACGGCGTACAATTGATATATTGGCTCAGATTCCCAAATTGCCTGATATTGACCCATTGCTGCAAAGCAACGCAATGACTGCATCCAATGTGATGGACCGCCCTCCAATAAGTGAGCTGGCTGGATGA 3525 0.4304 MNSLTLLSHPPHTTLHSSTLSTDKACPFLQSHSHSRALGFCFPKPLRPPAQISSRFRISYKFRRSLFPVESQLSDVDEDDDDDDDDDEAADEYDVPGEALDGVEDEIETSMATSEAPASRSDEFKWQRVEKLCNEVREFGEELIDVEELASIYDFRIDKFQRLAIQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVSRGRRLFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGMVSSGSGLFHVDVIVLDEVHYLSDIYRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWISQIHGKTELVTSSKRPVPLTWHFSTKTSLLPLLDEKGKSMNRKLSLSYLQNYASGDNSYKDERSRRRNLKKRESDMSYSSFASIHGQSSLSKNDINTIRRSQVPQVMDTLWHLKARDMLPAIWFIFSRKGCDASVQYLEDCNLLDESEMSEVDLALKRFRLQYPDAVRESAVKGLLQGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGESGRIQLSSNELLQMAGRAGRRGIDESGHAVLVQTPYDGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVTRRLSESNDLKVLQAGRTLEEARKLVEQSFGNYVGSNVMLAAKEELTKVEKEIEVLSSEVTDDAIDRKSRKLLSEMAYNEIANLQEELRAEKRLRTELRRRMELRRMSALKLLLKESENGHLPFVCLQYKDSEDVQHLVPAVYLGKVDSFDGSKVKNMVYTNDCFALNAVVTELNVDDTDSQPNGKPSYYVALGSDNSWYLFTEKWIKTVYRTGFPNVALAQGDALPREIMRALLDKADIQWEELAKSELGGLWCIEGSLETWSWSLNVPVLSSLSEDDEVLKMSQAYYEAVECYKEQRNKVSRLKKKIARTEGFKEYKKIIDMSKFTEEKIKRLKARSNRLSSRIEQIEPSGWKEFLQVSNVIHETRALDINTHIIFPLGETAAAIRGENELWLAMVLRSKVLLGLKPAQLAAVCGSLVSEGIKVRPWKNNSYIYEASTTVINVISLLDEQRNSLLQLQEKHDVQIPCCLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDILAQIPKLPDIDPLLQSNAMTASNVMDRPPISELAG* 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0912 1174 SMART helicmild6 490 576 IPR001650 -
Vvi1g0912 1174 Pfam DSHCT (NUC185) domain 1004 1169 IPR012961 -
Vvi1g0912 1174 CDD SF2_C_Ski2 431 588 - -
Vvi1g0912 1174 Gene3D - 956 1166 - -
Vvi1g0912 1174 FunFam DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 956 1166 - -
Vvi1g0912 1174 MobiDBLite consensus disorder prediction 379 395 - -
Vvi1g0912 1174 Pfam DEAD/DEAH box helicase 160 312 IPR011545 GO:0003676|GO:0005524
Vvi1g0912 1174 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 423 622 IPR001650 -
Vvi1g0912 1174 MobiDBLite consensus disorder prediction 378 401 - -
Vvi1g0912 1174 MobiDBLite consensus disorder prediction 73 118 - -
Vvi1g0912 1174 Gene3D - 337 607 IPR027417 -
Vvi1g0912 1174 MobiDBLite consensus disorder prediction 73 105 - -
Vvi1g0912 1174 Coils Coil 666 686 - -
Vvi1g0912 1174 Gene3D - 118 336 IPR027417 -
Vvi1g0912 1174 FunFam ATP-dependent RNA helicase 118 336 - -
Vvi1g0912 1174 Coils Coil 952 972 - -
Vvi1g0912 1174 Coils Coil 701 728 - -
Vvi1g0912 1174 SMART ultradead3 153 343 IPR014001 -
Vvi1g0912 1174 SMART DSHCT_2 999 1173 IPR012961 -
Vvi1g0912 1174 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 165 329 IPR014001 -
Vvi1g0912 1174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 589 IPR027417 -
Vvi1g0912 1174 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 110 1158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0912 Vvi-Chr1 9932826 9946035 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0912 K26077 - vvi:100253458 2225.28