Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0909 ATGAGAACCGCTTCCACCTTGCCAAAATTATTCATTGCCATAGCTCTTCTATCCGGCCTCGTCAAACCTGATCCTGACCCACTTCAAGACTACTGCATCGCTGATACAAAAGCGTCCAAAGCTTTCTTCATCAATGGTGTGCCCTGCATTGACCCACAGCTAGCACAGGTCTCACACTTCACTACATCAGCACTGTCCAAACCCGGAAACACAAGTGCCAACCCCTTCGGTTTCAGTATCACACTCACCAACACCATGAACTTGCCAGGGTTCAACACAATGGGCCTGACCATGGCTCGGGCAGATATAGCAGCCAATGGGCTGGTCCCACTCCACAGCCACCCGAGGGCCTCGGAGGTGGCCACACTCCTAAAGGGTGCGCTCCTAGTGGGGTTCATCGACACCAGTAATCGTCTATTCACACAACTATTAAGGCCCGGTGACTCCTTTGTGTTCCCAAAAGGGATGATCCATTTTCTCTATAATCTTGACTCGTTAGCCCCAGCAGTGGTGTTGGCCGGCCTCAATAGCCAGAACCCTGGTACACAACTAACTTCTACGGCCGCGTTCGCAACAAACCCACGTTTACCGGATGAGGTTTTGAAGAAGGCATTTCAGATTAGCGGGCAGGATGTCGCCAGGATTCGGAGGAACCTTGGAGGGTGA 666 0.5195 MRTASTLPKLFIAIALLSGLVKPDPDPLQDYCIADTKASKAFFINGVPCIDPQLAQVSHFTTSALSKPGNTSANPFGFSITLTNTMNLPGFNTMGLTMARADIAANGLVPLHSHPRASEVATLLKGALLVGFIDTSNRLFTQLLRPGDSFVFPKGMIHFLYNLDSLAPAVVLAGLNSQNPGTQLTSTAAFATNPRLPDEVLKKAFQISGQDVARIRRNLGG* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0909 221 Gene3D Jelly Rolls 23 221 IPR014710 -
Vvi1g0909 221 Pfam Cupin 65 212 IPR006045 -
Vvi1g0909 221 SMART Cupin_1_3 63 213 IPR006045 -
Vvi1g0909 221 SUPERFAMILY RmlC-like cupins 24 218 IPR011051 -
Vvi1g0909 221 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 21 215 - -
Vvi1g0909 221 CDD cupin_OxOx 24 219 IPR001929 GO:0030145
Vvi1g0909 221 FunFam germin-like protein subfamily 2 member 1 23 221 - -
Vvi1g0909 221 PRINTS Germin signature 142 162 IPR001929 GO:0030145
Vvi1g0909 221 PRINTS Germin signature 176 191 IPR001929 GO:0030145
Vvi1g0909 221 PRINTS Germin signature 112 132 IPR001929 GO:0030145
Vvi1g0909 221 ProSitePatterns Germin family signature. 107 120 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0909 Vvi-Chr1 9901187 9901852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0909 1 220 Miscellaneous Gene Families AT5G39130 41.256 8.15e-54 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0909 - - vvi:100246738 438.343