Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0902 ATGAGATTTCATGTTCTCTGTGCTGCAATTTTTCTTCCACTTCTCACGACATCAGTCTCTGCGCGTTTCTTCCCAAATGCACCATCTATGCCTCCGTCGTCACCGCCCAACGCCACCACGAGCGGCTGGGATGCATTCAAGAAGTTCGCTGGGTGTCATGCTGGAGATAAAGCCGACGGCTTAGCCAAGCTCAAAGAGTACTTCCACTACTTTGGCTACATCCACAATTCCAACTACACTGATGACTTCGACGATGCTTTTGAACAGGCTCTCAAGACTTATCAACTCAATTTCAATCTCAATACCACGGGACAACTCGACGAAGCCACCCTAAATCAGATTGTGAGTCCCAGATGCGGCAATGCTGACATAGAAAACGGCTCCAGTTCCATGAATTCCGGTAAATCCACGCCGTCGACCAGCGGCCATTTCCACACCGTCGGTCACTACAGCTTCTTCGATGGCAAGCCTGTCTGGCCGGAGTCAAAGCGTAATCTGACGTACGGGTTTCTGCCAGACAATCAGTTGTCGGACACCGTCAAGGCCGTGTTCACAAGCGCATTTGAGCGGTGGGCGGCAGTAACGCCCTTGACTTTCACGGAAAGTGATTCGTATTACTCCGCCGATCTCAGGATTGCATTCTACACCGGAGACCACGGCGACGGAGAGGCTTTCGACGGAGTATTGGGAACCCTAGCACACGCCTTCTCTCCTACGAACGGACGGTTCCACTTGGACGGCGAGGAGAATTGGGTAGCTACAGGCGACGTCACAACATCGTCTATATCTTCGGCGATCGACCTGGAATCCGTGGCGGTTCACGAGATTGGGCATCTGCTTGGGTTAGGGCACTCGTCGGTAGAAGAAGCGATCATGTACCCAACGATCACCTCACGGACAAAGAAGGTGGAGCTTGCTAGTGATGACATTCAGGGGATTCAGGAATTGTACGGCAGTAATCCCAATTACAATGGTTCCTCTACGTCGCCGTCTCAGGAGAGCGAAACCACTAATAATAGCGGGGCCTACACTGCAGCTCCACGGTGGAGTTTTGGGATCCTTTTGGCCGTTGGATTTGGTTTGTTGATGTTGTGA 1095 0.5187 MRFHVLCAAIFLPLLTTSVSARFFPNAPSMPPSSPPNATTSGWDAFKKFAGCHAGDKADGLAKLKEYFHYFGYIHNSNYTDDFDDAFEQALKTYQLNFNLNTTGQLDEATLNQIVSPRCGNADIENGSSSMNSGKSTPSTSGHFHTVGHYSFFDGKPVWPESKRNLTYGFLPDNQLSDTVKAVFTSAFERWAAVTPLTFTESDSYYSADLRIAFYTGDHGDGEAFDGVLGTLAHAFSPTNGRFHLDGEENWVATGDVTTSSISSAIDLESVAVHEIGHLLGLGHSSVEEAIMYPTITSRTKKVELASDDIQGIQELYGSNPNYNGSSTSPSQESETTNNSGAYTAAPRWSFGILLAVGFGLLML* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0902 364 Pfam Matrixin 162 318 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vvi1g0902 364 PANTHER MATRIX METALLOPROTEINASE 37 328 - -
Vvi1g0902 364 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 152 321 - -
Vvi1g0902 364 Gene3D Collagenase (Catalytic Domain) 52 324 IPR024079 GO:0008237
Vvi1g0902 364 CDD ZnMc_MMP 162 318 IPR033739 GO:0008237|GO:0008270
Vvi1g0902 364 MobiDBLite consensus disorder prediction 317 341 - -
Vvi1g0902 364 Pfam Putative peptidoglycan binding domain 61 113 IPR002477 -
Vvi1g0902 364 PRINTS Matrixin signature 114 127 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi1g0902 364 PRINTS Matrixin signature 271 296 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi1g0902 364 PRINTS Matrixin signature 184 199 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi1g0902 364 PRINTS Matrixin signature 305 318 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi1g0902 364 PRINTS Matrixin signature 208 236 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vvi1g0902 364 SMART col_5 155 319 IPR006026 GO:0006508|GO:0008237|GO:0008270
Vvi1g0902 364 SUPERFAMILY PGBD-like 51 124 IPR036365 -
Vvi1g0902 364 FunFam Metalloendoproteinase 1 51 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0902 Vvi-Chr1 9785007 9786101 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0902 - - vvi:100255347 717.998