Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0900 ATGGGATTTCTCCGATGTCCCTTGTCTTGCCATAAAGAGAAAGAATCTCAATCTCGAGCTCAAGCTCAAGCTCAAGCTCAAGCACAAGCACATCACCTTCACTCAGATTCTTCATGCCTTCATTCAGAATCATCAAACTCTCTCGCTTCTCAACCAAGTCTACCATCTGTTCCTTCTCTCACCTCCCAATCCCGACGGCATGAACAAGCCATCACCACCCACCACCACTGCATTTCCACTCTCAAAGGCCACTCCTCCTATGTCTTCTCCCTCGCCCTAGCCGGAAAATTCCTCTACAGTGGCTCTTCCGACAAGGAGATTCGGATATGGAGCAGAGATCCTTCGAGGCTAGAGACTTCTAACGACAACGGGGTAGCTCTAGGCAACGGTGCGGTGAAGTCCCTGGTGGTTTTGGGAGATAAACTATTCAGTGCCCACCAAGATCAAAAAATTAGAGTGTGGAAAGTCGACAACGATTCTCCTCACCAAAAATACAAGTGCATGGCCACACTCCCAACGCTGAGTGATCGTGCCTTGAAACTCTTTTCAGCCAGTAACTATGTACAGGTGCGTAGGCACAAGAAATGCACATGGGTTCATCACGTTGACACCATATCTGCATTAGCCTTGTCAGAAGATGGCTCTCTCCTATACTCCGCTTCCTGGGATCGAACGTTCAAAATTTGGAAAACCACCGACTTCAGATGTCTGGAGTCAGCGGAAAAGGCACATGATGACGCGATCAATGCACTAGTGCTGTCCACCGATGGGATTGTTTACACTGGTTCCGCTGACAGGAAAATCAAGGTGTGGAAGAAGCATGAAGGAGAGAAGAAGCATAGGCTTGTGGCTACACTAGAGAAACACAAGTCAGCTGTTAATGCCTTAGCTCTTAGCCCTGATGGATCAGTGTTGTATTCAGGTGCATGTGATCGATCAATTATTGTATGGGAAAAAGATACTAGTTCCAGTGGTGGGCACATGGTGGTTGCTGGTGCACTTAGAGGGCACACCAAGGCCATTTTATGCCTGGCCATTGTCTCGGATTTGGTGTTCAGTGGATCGGCCGATAAGACAGTTAGGATTTGGAAGAAGGGACTTCAGAGGAGCTATTCTTGTTTGGCCGTCTTTGAAGGACACAGAGGCCCAGTTAAGTGTTTGACTGCTGCCGTTGACAATTACAATGGCAGAAGCAATTCCGACGATGATGCTGCTTATCTTATTTACAGTGGTAGTTTGGATTGTGAAATTAAAGTCTGGCAATTAAGGATTCAGTGTGTTTGA 1284 0.4712 MGFLRCPLSCHKEKESQSRAQAQAQAQAQAHHLHSDSSCLHSESSNSLASQPSLPSVPSLTSQSRRHEQAITTHHHCISTLKGHSSYVFSLALAGKFLYSGSSDKEIRIWSRDPSRLETSNDNGVALGNGAVKSLVVLGDKLFSAHQDQKIRVWKVDNDSPHQKYKCMATLPTLSDRALKLFSASNYVQVRRHKKCTWVHHVDTISALALSEDGSLLYSASWDRTFKIWKTTDFRCLESAEKAHDDAINALVLSTDGIVYTGSADRKIKVWKKHEGEKKHRLVATLEKHKSAVNALALSPDGSVLYSGACDRSIIVWEKDTSSSGGHMVVAGALRGHTKAILCLAIVSDLVFSGSADKTVRIWKKGLQRSYSCLAVFEGHRGPVKCLTAAVDNYNGRSNSDDDAAYLIYSGSLDCEIKVWQLRIQCV* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0900 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 364 IPR001680 GO:0005515
Vvi1g0900 427 Gene3D - 59 170 IPR015943 GO:0005515
Vvi1g0900 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 239 IPR001680 GO:0005515
Vvi1g0900 427 SUPERFAMILY WD40 repeat-like 77 422 IPR036322 GO:0005515
Vvi1g0900 427 Gene3D - 171 425 IPR015943 GO:0005515
Vvi1g0900 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 81 120 IPR001680 GO:0005515
Vvi1g0900 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 281 IPR001680 GO:0005515
Vvi1g0900 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 81 111 - -
Vvi1g0900 427 MobiDBLite consensus disorder prediction 24 67 - -
Vvi1g0900 427 FunFam BnaA09g28200D protein 188 276 - -
Vvi1g0900 427 Pfam WD domain, G-beta repeat 199 230 IPR001680 GO:0005515
Vvi1g0900 427 Pfam WD domain, G-beta repeat 282 317 IPR001680 GO:0005515
Vvi1g0900 427 Pfam WD domain, G-beta repeat 372 420 IPR001680 GO:0005515
Vvi1g0900 427 Pfam WD domain, G-beta repeat 77 111 IPR001680 GO:0005515
Vvi1g0900 427 Pfam WD domain, G-beta repeat 334 364 IPR001680 GO:0005515
Vvi1g0900 427 Pfam WD domain, G-beta repeat 242 272 IPR001680 GO:0005515
Vvi1g0900 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 272 - -
Vvi1g0900 427 SMART WD40_4 279 318 IPR001680 GO:0005515
Vvi1g0900 427 SMART WD40_4 370 421 IPR001680 GO:0005515
Vvi1g0900 427 SMART WD40_4 327 364 IPR001680 GO:0005515
Vvi1g0900 427 SMART WD40_4 74 111 IPR001680 GO:0005515
Vvi1g0900 427 SMART WD40_4 119 155 IPR001680 GO:0005515
Vvi1g0900 427 SMART WD40_4 233 272 IPR001680 GO:0005515
Vvi1g0900 427 SMART WD40_4 191 230 IPR001680 GO:0005515
Vvi1g0900 427 PRINTS G protein beta WD-40 repeat signature 408 422 IPR020472 -
Vvi1g0900 427 PRINTS G protein beta WD-40 repeat signature 98 112 IPR020472 -
Vvi1g0900 427 PRINTS G protein beta WD-40 repeat signature 351 365 IPR020472 -
Vvi1g0900 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 334 364 - -
Vvi1g0900 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 286 318 - -
Vvi1g0900 427 CDD WD40 77 421 - -
Vvi1g0900 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 198 230 - -
Vvi1g0900 427 MobiDBLite consensus disorder prediction 24 68 - -
Vvi1g0900 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 286 318 IPR001680 GO:0005515
Vvi1g0900 427 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 25 423 IPR045182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0900 Vvi-Chr1 9773214 9774497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0900 191 422 Miscellaneous Gene Families AT5G08390 23.305 1.47e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0900 - - vvi:100260428 829.706