Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0894 ATGGAGGTTCCACGGCCCTTTCTCATCGTCTTCCTAATCTCCATTGCCAACCCCTTTTGCTCTTGTTTGAGCCTGCAACCTTCTCTGAATTCGTTCACACCATACTGGAATTCCTCAGTCAAAGATCACATAACCGGAGTCGCTAATGATCCATTTACAGTGAATTGGATGAAGAGGATAAGGAGGGAGATTCACGAGAACCCAGAGCTGGCATATGAGGAGTTCGCCACAAGCGCGGTCATTAGGCGTGAGCTTGAGGAGCTGGGTGTTGGGTATCGGTGGCCGGTAGCCAGGACTGGGGTTGTGGCCACCATTGGTTCAGGGTCTCCACCTTTTGTTGCTCTGAGGGCAGACATGGATGCTTTGCCTATTCAGGAAATGGTGGAATGGGAGCATAAGAGCAAAGTCGATGGAAAAATGCATGCCTGTGGACATGATGCACATGTAGCAATGCTCCTTGGTGCGGCAAAGATACTTCAAGAAATCCGAGATGAATTGCAGGGAACCGTCGTTCTTATATTTCAACCAGCGGAGGAACGTGGGGTAGGTGCAAAAGACATGATCCAGGAAGGGGTGCTTGAAAATATCGAGGCTATCTTTGGGATTCATACAGTGCATGGATATCCAACAGGCACTGTTGCTGCACGGTCCGGAGAGTTTCTAGCTGGGTGTGGAGGCTTCAGAGCAAAGATCAGTGGGAGAGGGGGTCATGCTGCAAGTCCGCAGCATTCTATTGATCCAATCTTGGCCGTTTCGACATCAGTGATTAGCTTGCAAAATATTGTTTCCAGGGAGATAGATCCTTTGGATTCTCAGGTGGTTTCTGTAGCCATGATCCATGGAGGAACTGCATTTAATGTCATTCCAGATGCAGCTACTATAACTGGAACTTTCAGAGCCTTCAGCAAGAAGAGCTTCTATGCCCTCAGGGAAAGGATAGAAGAGGTTGTCAAAGCACAAGCAGCAGTGCATCGGTGCTCAGCAGAAATTGACTTCGCAGGAATGGAACAGCCCACAATTCCTCCAACTATAAATGATGAGAGGATTTATGAACATGTAAGACAAGTCTCCATTGAAATAGTGGGTGAAGAAAACACAAAAAGATCTCCATCCTTCATGGGCAGTGAAGATTTTGCCTTTTACTTGGACAAAGTACCTGGATCCTTCCTTTTAGTAGGCATGAGAAACGAGAGGGCAGGATCCATATATCCTCCACACAGCCCTTACTTCAGCATTGACGAAGAAGTGCTTCCCATTGGGCATTTGCATATTCTTACCTTTCAAATTCAACCAAAAATTCGTCCTTCCATAATCTCAGCCATGGGAATTCTACAGCTCCTCCTCATCTTCTTCCTATTCCCCATTACCACCCCCTCCTTCTCTTGTTTGAACTTGCAGTATTCTCTGAATTCTCTCACATTACCACACCGAAATTCTTCATCTAAAGAGCACATAACTGGGCTGGCTAATGATCCAATTACAGTGAACTGGATGAAGAGGATACGGAGGGAGATTCATGAGAACCCTGAACTTGCATATGAGGAATTTGCCACAAGCGCGCTCATTAGGCGTGAGCTTGAGCAGCTGGGTATTGGGTATCGGTGGCCCATAGCCGGGACTGGGGTTGTGGCCACCATTGGTTCAGGGTCTCAACCTTTTGTTGCTCTGAGGTCAGATATGGATGCTTTGCCTATTCAGGAAATGGTGGAATGGGAGCATAAGAGCAAAGTAGACGGAAAAATGCACGCCTGTGGACATGATGCACATGTCGCAATGCTCCTTGGTGCGGCAAAAATACTTCAAGAAATCCGAGATGAATTGCCGGGAACTGTTGTTCTTATATTTCAACCAGCAGAGGAACGTGGTGTAGGTGCAAAAGCCATGATCCAAGAAGGAGCGCTTGAAAATGTGGAGGCTATCTTTGGGGTTCATGCAGTTATTGAGTATCCCACAGGCACTGTTGCTGCACGATCTGGAGAATTTCTAGCTGGGTGTGGAGGCTTCAGGGCAAAGATCAGTGGAAGAGGGGGTCATGCAGCAGTTCCACAACATTCTATTGATCCCATCTTGGCAGTTTCCACATCAGTAGTTAGTTTGCAAAATATTGTTTCCAGGGAGACAGATCCTTTGGATCATCAGGTGGTTTCTGTAGCCATGATCCATGGAGGGACTGCATTTAATGTCATTCCAGATGCAGCTACTATAACTGGAACTTTTAGAGCCTTCAGCAAGAAGAGCTTCTATGCACTCAGGGACAGAATAGAAGAGGTTATCAAAGCACAAGCAGCAGTGCATCGGTGCTCAGCTGAGATTGACTTCTCAGGAATGGAACTGCCCACAATTCCTCCAACTATAAATGATAGGAGGATTTATGAACATGCAAGAAAAGTCTCCAGTGAAATGGTAGGTGAAGAAAACACCAAAACATCTCCAGTCTGCATGGGCAGTGAAGATTTTGCTTTTTACTTGGACAAAGTACCTGGATCCTTCCTTTTTCTAGGCATGAGAAATGAGAAGGCAGGATCCACATATCCTCCACACAGCCCTTACTACGTCCTCGATGAGGAAGTGCTTCCCATTGGGGCTGCAATACATGCCGCATTTGCACTTTCTTACCTTTCAGATTCGAACAATAATTTTCACTTCCATGATGTAGGATTCCCCCTCTGTGTCATCTCCTTGATTTATAATGTTCTAGTTGACAACAGATTGTCTCTTGAGATGTTTTATATTGAGAGTCCTACATGA 2748 0.4607 MEVPRPFLIVFLISIANPFCSCLSLQPSLNSFTPYWNSSVKDHITGVANDPFTVNWMKRIRREIHENPELAYEEFATSAVIRRELEELGVGYRWPVARTGVVATIGSGSPPFVALRADMDALPIQEMVEWEHKSKVDGKMHACGHDAHVAMLLGAAKILQEIRDELQGTVVLIFQPAEERGVGAKDMIQEGVLENIEAIFGIHTVHGYPTGTVAARSGEFLAGCGGFRAKISGRGGHAASPQHSIDPILAVSTSVISLQNIVSREIDPLDSQVVSVAMIHGGTAFNVIPDAATITGTFRAFSKKSFYALRERIEEVVKAQAAVHRCSAEIDFAGMEQPTIPPTINDERIYEHVRQVSIEIVGEENTKRSPSFMGSEDFAFYLDKVPGSFLLVGMRNERAGSIYPPHSPYFSIDEEVLPIGHLHILTFQIQPKIRPSIISAMGILQLLLIFFLFPITTPSFSCLNLQYSLNSLTLPHRNSSSKEHITGLANDPITVNWMKRIRREIHENPELAYEEFATSALIRRELEQLGIGYRWPIAGTGVVATIGSGSQPFVALRSDMDALPIQEMVEWEHKSKVDGKMHACGHDAHVAMLLGAAKILQEIRDELPGTVVLIFQPAEERGVGAKAMIQEGALENVEAIFGVHAVIEYPTGTVAARSGEFLAGCGGFRAKISGRGGHAAVPQHSIDPILAVSTSVVSLQNIVSRETDPLDHQVVSVAMIHGGTAFNVIPDAATITGTFRAFSKKSFYALRDRIEEVIKAQAAVHRCSAEIDFSGMELPTIPPTINDRRIYEHARKVSSEMVGEENTKTSPVCMGSEDFAFYLDKVPGSFLFLGMRNEKAGSTYPPHSPYYVLDEEVLPIGAAIHAAFALSYLSDSNNNFHFHDVGFPLCVISLIYNVLVDNRLSLEMFYIESPT* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0894 915 CDD M20_IAA_Hyd 498 873 IPR044757 GO:0009850|GO:0016787
Vvi1g0894 915 Pfam Peptidase family M20/M25/M40 555 869 IPR002933 GO:0016787
Vvi1g0894 915 FunFam N-acetyldiaminopimelate deacetylase 663 780 - -
Vvi1g0894 915 Pfam Peptidase dimerisation domain 223 322 IPR011650 -
Vvi1g0894 915 Pfam Peptidase dimerisation domain 664 763 IPR011650 -
Vvi1g0894 915 SUPERFAMILY Bacterial exopeptidase dimerisation domain 222 341 IPR036264 -
Vvi1g0894 915 Pfam Peptidase family M20/M25/M40 114 413 IPR002933 GO:0016787
Vvi1g0894 915 NCBIfam amidohydrolase 58 420 IPR017439 GO:0016787
Vvi1g0894 915 NCBIfam amidohydrolase 499 861 IPR017439 GO:0016787
Vvi1g0894 915 SUPERFAMILY Bacterial exopeptidase dimerisation domain 663 782 IPR036264 -
Vvi1g0894 915 Gene3D Zn peptidases 59 417 - -
Vvi1g0894 915 SUPERFAMILY Zn-dependent exopeptidases 55 421 - -
Vvi1g0894 915 CDD M20_IAA_Hyd 57 420 IPR044757 GO:0009850|GO:0016787
Vvi1g0894 915 FunFam N-acetyldiaminopimelate deacetylase 222 339 - -
Vvi1g0894 915 Gene3D Zn peptidases 500 858 - -
Vvi1g0894 915 Gene3D - 222 340 - -
Vvi1g0894 915 Gene3D - 663 781 - -
Vvi1g0894 915 PANTHER PEPTIDASE M20 FAMILY MEMBER 477 883 IPR017439 GO:0016787
Vvi1g0894 915 SUPERFAMILY Zn-dependent exopeptidases 496 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0894 Vvi-Chr1 9674651 9688207 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0894 K14664 - vvi:100263860 877.47