Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0886 ATGATGCTTGGCCTAGGAGGCTGTCCGCGACTCTGCACATTGCACAACACCACTTCTTCTCTCCTATCCCAAAGCAAAACCCTCCAATCCTACCAAACCTACCAACCACTTCTCCCTTTTCTCTCAGTAAATGCATCTTCGACTGCTTCATTTCTCCCTTCAATTCATCGATTAAGAGAACCTCAATTGGGCTTTCGTGTTGTTCTTGGTCGAGAGCGAATTGGGTTTTGTGTTTCTGCTCGCAAGCGAAGAAACGGTGACGGTACCCCATTAGATGAGGATGGTATTGGTGATGATGGGGACGAGTCCGATGATGAAGATGCATTTATAGCTTTCCCTGATATGATGAGGTGGTATAATAACAAGCCAAGTGGATTTGGTGAAGGTAAAGTGTATGATACTCGTATTGAGGACAAGTTGCTGGAAGAAATAAAGCAGAGCAGAGTGGCTCAGCTGGCCAATATCGATAAGCTTAAGAAGAATCCTGTGAACCCCAATTCCGAGAAAGCTAACAATCAAGGACAGAAAGCACCTGAACCTGTTGCAAATGCATTTCGTGTACGTGTGGCGAACCTTCCTAAGAAAAAGAACATCCATAGAGATCTGCAGTTGGCTTTTAAAGGAGTTCCTGGTATAGTTAATATAATCCCTGCAGTCTCTGGAAATAAGAAGACTAGGGATCCTGTTTGCAAGGGCTTTGCTTTTGTTGATCTCAAGACTGAGAACGACGTAAATAGGTTTGTACATATGTTTTCCGAACAAAATATAACTTTTGGTAAGATTCGGAAGCAGATAAAATGTGAAATAACGAATTCAGGCTCTCCCAATGTTACTTATGAGCAATCAGCAGTTAGCACCTTCACTGATCCCCAGTCAACAGTTCCCAGTTTTGATGAAACTCCAGCTTCTGACTTTGATATAGATAATTTTTCATTAGATGTATGGGAGGAAACTGCCTCAGAGAAGTCTGATGGTCCAGATGATTTAGAAGGGGACATGGCTTCTGATTTCGACATGGATATTACTTCCTTGGATACATGGCAGGAAACCGCCTCTGATGAATCTAATGCCCTGGATGATGAGCAGAAGATAACAGTGGAAAGGGAAGATGTGAGAGAGAATTTGGAATCTTTCAGTATTTCAGAGATGGATGGTGATGATAGATTGGAACCAAGTATAGAGTCTGCAAGTGATTCATTATCCTCAAAGCAGCTAGAGGAAATCTGGGCACTTGAGAATAAACCACTTGGTAAACAAGGGGAGAAGGTTCTGAAGTTGAAGGTTCAAGCATCAGAGCTTAATGATGGTGATATTACTGATCAAAGAGTAGGGGCTGCTGTTGATTCATCATCCTCCAAGCCATTAGAGAATATCCAGGCACTTGAGAGAAGGTTACTTGCCAGAGGAAAAGGATGGAAGGTTTCAAAGTTAAATATTCATGCAGCTGGGCAGAATTTTGGTGATAGCATGGACCCTAGACAGCAGCCTATAGCTGATTCATTGCCCTCAAAGCAGCTAGAGAGTATCCAGGAACTTGAGAGAAGGCCGCTTGCCAGAGGGAAATGGGGGATGGTTCCAAAGTCGAAGATTCCAACATCAGAGCTGAATGGTGATGATAGGAGGGAAACGAGAGATGAGCCTACAACCAATTCAGTATCCTCAAAGCAGCAGAAGAAAAAGAAGAAACTAGAGAAAAAGCAAATTGCCCAAAAAAACCAAGAGAAGGCTCCAGTGTTGAAACTTCCAGGATCTGCAAATAGGTTAAGGATCAAGGAGAAAGTTGTGCTAACTGATGTGTTCTCCAAGTATGGAGTAAAAGCTGCAAACACTACAAAACAACAGGGCTAA 1848 0.4275 MMLGLGGCPRLCTLHNTTSSLLSQSKTLQSYQTYQPLLPFLSVNASSTASFLPSIHRLREPQLGFRVVLGRERIGFCVSARKRRNGDGTPLDEDGIGDDGDESDDEDAFIAFPDMMRWYNNKPSGFGEGKVYDTRIEDKLLEEIKQSRVAQLANIDKLKKNPVNPNSEKANNQGQKAPEPVANAFRVRVANLPKKKNIHRDLQLAFKGVPGIVNIIPAVSGNKKTRDPVCKGFAFVDLKTENDVNRFVHMFSEQNITFGKIRKQIKCEITNSGSPNVTYEQSAVSTFTDPQSTVPSFDETPASDFDIDNFSLDVWEETASEKSDGPDDLEGDMASDFDMDITSLDTWQETASDESNALDDEQKITVEREDVRENLESFSISEMDGDDRLEPSIESASDSLSSKQLEEIWALENKPLGKQGEKVLKLKVQASELNDGDITDQRVGAAVDSSSSKPLENIQALERRLLARGKGWKVSKLNIHAAGQNFGDSMDPRQQPIADSLPSKQLESIQELERRPLARGKWGMVPKSKIPTSELNGDDRRETRDEPTTNSVSSKQQKKKKKLEKKQIAQKNQEKAPVLKLPGSANRLRIKEKVVLTDVFSKYGVKAANTTKQQG* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0886 615 Coils Coil 141 161 - -
Vvi1g0886 615 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 8 614 - -
Vvi1g0886 615 MobiDBLite consensus disorder prediction 488 504 - -
Vvi1g0886 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 272 IPR000504 GO:0003723
Vvi1g0886 615 MobiDBLite consensus disorder prediction 533 548 - -
Vvi1g0886 615 MobiDBLite consensus disorder prediction 375 393 - -
Vvi1g0886 615 SUPERFAMILY RNA-binding domain, RBD 171 271 IPR035979 GO:0003676
Vvi1g0886 615 Coils Coil 554 574 - -
Vvi1g0886 615 MobiDBLite consensus disorder prediction 485 504 - -
Vvi1g0886 615 CDD RRM_SF 187 262 - -
Vvi1g0886 615 MobiDBLite consensus disorder prediction 375 397 - -
Vvi1g0886 615 Gene3D - 163 273 IPR012677 -
Vvi1g0886 615 MobiDBLite consensus disorder prediction 515 584 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0886 - - vvi:100250082 1169.45