Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0885 ATGAACTGCCTGCCGCATGTCTCTTCCTACTATTCGGCCATACTTTCAAAAACCAGTCGTTTCATTGCTAAGAGCTCTTTATATGGATGTTCTACCTCATCATGGAAAATTAACTTCGAGAATGCTAATGTTAAAACAAATAATTTAGAGTTGATGTTGACGAGATTTCGTGTTCAGAGCTATTCATCTCGGGGGCGTGGAGCCAAATCGCAATCTCAAAAGTTAGAGTCTAAACCTGTGATGGAAGAAGAGAAGGATGCATTTTTTGTGGTTCGGAAAGGGGATGTTGTTGGTGTTTACAAGACTTTCAGTGATTGCCAAGCTCAAGTTGGATCTTCTATATGCGATCCGCCTGTTAGTGTATACAAAGGATATTATTTACCTAAGGACACTGAAGAATATTTGGTATCCCGTGGTCTTAGGAATGCTCTTTACACCATCAGAGCTGCAGATTTGAAAGAGGATCTTTTCGGAAAACTCATGCCTTGTGCTTTTCAGCAAACAGCTTCTTCCAAAGGTGAAATATTGAGCAAGGATCTACCAAGAGAGAGTTCACAAGAAGTGATGGGATTAGAAATAGTGGGAGCAGTTGAATCAAGACCTATTACAACTGATCCATTGAAAGAGCATATCAAATTAGATCGTGTTGAGGCTCAGGCACTATTTTCTGATTGTCGTTCCTGTGTTGTTGAGTTTGATGGTGCTTCAAAAGGGAATCCTGGACCAGCTGGTGCAGCAGCTGTGCTGCGATCTGACAGTGGAAGAGTGATCTGTAGAGTGCGTGAAGGTTTGGGCTTAGCAACAAATAATGTAGCTGAATATCAAGCTATGATTTTAGGGTTGAAATATGCTCTTAAAAAAGGTTATACAAGCATTCGTGTACAAGGAGATTCCAAACTTGTCTGTATGCAGGTTCAGGGTCTCTGGAAGGCAAGAAACAAGAACATGTCTATCTTGTGTAAGGAGGCTAAAAAACTGAAGAATGAGTTCCTTTCGGTCGAGATCAATCATGTTCTAAGGGGATTAAACTCTGAGGCCGATGCTCAAGCAAACTTGGCCGTCCATCTTGCTGTCGGTGAAGTTCAGGAGGTGTGTGAGTAG 1101 0.4169 MNCLPHVSSYYSAILSKTSRFIAKSSLYGCSTSSWKINFENANVKTNNLELMLTRFRVQSYSSRGRGAKSQSQKLESKPVMEEEKDAFFVVRKGDVVGVYKTFSDCQAQVGSSICDPPVSVYKGYYLPKDTEEYLVSRGLRNALYTIRAADLKEDLFGKLMPCAFQQTASSKGEILSKDLPRESSQEVMGLEIVGAVESRPITTDPLKEHIKLDRVEAQALFSDCRSCVVEFDGASKGNPGPAGAAAVLRSDSGRVICRVREGLGLATNNVAEYQAMILGLKYALKKGYTSIRVQGDSKLVCMQVQGLWKARNKNMSILCKEAKKLKNEFLSVEINHVLRGLNSEADAQANLAVHLAVGEVQEVCE* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0885 366 FunFam RBR-type E3 ubiquitin transferase 228 357 - -
Vvi1g0885 366 Gene3D - 227 358 IPR036397 GO:0003676
Vvi1g0885 366 Pfam Reverse transcriptase-like 232 353 IPR002156 GO:0003676|GO:0004523
Vvi1g0885 366 SUPERFAMILY L9 N-domain-like 87 135 IPR009027 -
Vvi1g0885 366 Gene3D - 85 137 IPR037056 -
Vvi1g0885 366 PANTHER THIOL-DISULFIDE OXIDOREDUCTASE DCC 272 353 - -
Vvi1g0885 366 ProSiteProfiles RNase H type-1 domain profile. 224 355 IPR002156 GO:0003676|GO:0004523
Vvi1g0885 366 SUPERFAMILY Ribonuclease H-like 228 351 IPR012337 -
Vvi1g0885 366 CDD RNase_HI_like 228 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0885 Vvi-Chr1 9458179 9476207 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0885 - - vvi:100255243 723.005