Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0882 ATGGCGCCAAAGGCAAAGAAGAGTCGAGCACCCACTTCCGATCCAAATGGAATGTTCGCTGGAATGGTCGTTTTCTTGGTCGAGTATGGAGTCCAGACTCGTCGACTAGAGATTTGGAAGCAGAAACTGGTGCAAATGGGGGCTACTATTGCAGACCGTCTTTCGAAGAGGGTGTCTCATGTTTTTGCTGTGAATAGGGATGCCCTTCTCCGACAAGTTGGTCGTGAGCATTTGGAGCGCTTCCAAGGAAATGTGCTACAATACCAGTGGCTAGAGGATAGTTTGAGATTAGGAGAGAAGATATCTGAGGACTCATACAATCTAAAATTTGATTCAGAAGTACAAGATGGACCAGGAAACACTTCAGAAATTTTTCCTCAACCATCACAGTTAAACAATTCCCGTGAAGATGGAGCACCACAAAACAAAAGGATGAAATCCTCTCCAGAGAAAAATATGAATGAGGAAAGCAGGGAAAACAAAAGAAATAGCACTGCACATGAGACATCTGATACTGTCCAAGGTTCTGATGAATCATTCCGCACTCCAAGCCCAGAAAATTCTGGTTCAAATACCCTTGCTGAATACTTTACTATATCTTTTAATCAGGTGGGCACATTGGACTCATCCTTGCCATATAGTCCTCCTGACTTGAACAAGAATATCACTGAGATATTTGGGAAGCTTATTAACATATACAGAGCGCTGGGTGATGACAGGAGATCATTTAGCTATCACAAGGCTATAGGAGTTATCGAAAAGTTGCCTTTTAAAATTGAAAGTGCAGACCAGGTCAAGGACCTGCCTACAATTGGAAAATCAATGCAGGATCATATTCAAGAGATAGTGACTACCGGAAAGTTATCGAAGTTAGAGCACTTTGAGACAGATGAAAAGGTACGAACAATAAATTTATTTGGGGAAGTATGGGGTATTGGTCCGGCCACTGCACTGAAACTATATGAGAAAGGATACCGTACGCTAGATGATCTGAAGAATGAGGATTCACTAACAAACGCACAGAAGTTAGGGTTGAAATATTTTGATGATATCAAGAAGAGGGTTCCACGCCATGAGGTCCAAGAGATGGAACTTCTTTTGCAGAAAGCTGGAGAAGAGGTTTTGCCTGGGGTGTCTATTGTATGTGGAGGATCCTATAGACGAGGAAAAGCTTCCTGTGGAGATTTGGATATTATAATTACACATCCTGATGGAAAAAGTCACAGAGGATTTTTACCAAGATATGTAAAGCACTTGAAGGATATGAAGTTTTTACGAGAAGATTTGATATTCAGTACTCACAGTGAAGAGGGTACTGATTCAGGTGTTGACACTTATTTTGGTCTTTGCACATATCCTGCTCGAGAACTGCGACATCGCATAGATTTGAAGGTATACCCGAGAAACATCTATGCATTTGGACTAATAGCTTGGACTGGGAATGATGTATTAAATAGGAGGTTAAGAATACTCGCAGAATCCAAAGGATACCGGCTTGACGATACAGGGCTGTTTCTGGCTACTCAGGGTTCAGGTGGTAAACGGGGATCAAGAGCTACTACAAGTTTAAGTTTTAGGACGGAACAAGAAGTGTTTGAGTTCCTGGGATTCCCTTGGCTTGAACCACATGAAAGAAATCTGTGA 1644 0.4185 MAPKAKKSRAPTSDPNGMFAGMVVFLVEYGVQTRRLEIWKQKLVQMGATIADRLSKRVSHVFAVNRDALLRQVGREHLERFQGNVLQYQWLEDSLRLGEKISEDSYNLKFDSEVQDGPGNTSEIFPQPSQLNNSREDGAPQNKRMKSSPEKNMNEESRENKRNSTAHETSDTVQGSDESFRTPSPENSGSNTLAEYFTISFNQVGTLDSSLPYSPPDLNKNITEIFGKLINIYRALGDDRRSFSYHKAIGVIEKLPFKIESADQVKDLPTIGKSMQDHIQEIVTTGKLSKLEHFETDEKVRTINLFGEVWGIGPATALKLYEKGYRTLDDLKNEDSLTNAQKLGLKYFDDIKKRVPRHEVQEMELLLQKAGEEVLPGVSIVCGGSYRRGKASCGDLDIIITHPDGKSHRGFLPRYVKHLKDMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPARELRHRIDLKVYPRNIYAFGLIAWTGNDVLNRRLRILAESKGYRLDDTGLFLATQGSGGKRGSRATTSLSFRTEQEVFEFLGFPWLEPHERNL* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0882 547 FunFam DNA polymerase lambda 295 353 - -
Vvi1g0882 547 SUPERFAMILY Nucleotidyltransferase 354 546 IPR043519 -
Vvi1g0882 547 Gene3D - 293 352 - -
Vvi1g0882 547 FunFam DNA polymerase 354 476 - -
Vvi1g0882 547 CDD NT_POLXc 220 545 IPR002054 GO:0003677|GO:0003887
Vvi1g0882 547 SUPERFAMILY DNA polymerase beta, N-terminal domain-like 213 294 IPR027421 -
Vvi1g0882 547 SMART polxneu3 217 546 IPR002054 GO:0003677|GO:0003887
Vvi1g0882 547 Pfam Fingers domain of DNA polymerase lambda 304 351 IPR018944 GO:0003677|GO:0034061
Vvi1g0882 547 PRINTS DNA-polymerase family X signature 460 469 IPR022312 GO:0003677|GO:0003887|GO:0006281
Vvi1g0882 547 PRINTS DNA-polymerase family X signature 395 403 IPR022312 GO:0003677|GO:0003887|GO:0006281
Vvi1g0882 547 PRINTS DNA-polymerase family X signature 476 489 IPR022312 GO:0003677|GO:0003887|GO:0006281
Vvi1g0882 547 PRINTS DNA-polymerase family X signature 527 545 IPR022312 GO:0003677|GO:0003887|GO:0006281
Vvi1g0882 547 PRINTS DNA-polymerase family X signature 381 395 IPR022312 GO:0003677|GO:0003887|GO:0006281
Vvi1g0882 547 PRINTS DNA-polymerase family X signature 311 328 IPR022312 GO:0003677|GO:0003887|GO:0006281
Vvi1g0882 547 SUPERFAMILY BRCT domain 14 109 IPR036420 -
Vvi1g0882 547 Pfam DNA polymerase beta thumb 475 546 IPR029398 -
Vvi1g0882 547 Pfam DNA polymerase beta palm 354 467 IPR028207 -
Vvi1g0882 547 PANTHER DNA POLYMERASE TYPE-X FAMILY MEMBER 13 546 IPR022312 GO:0003677|GO:0003887|GO:0006281
Vvi1g0882 547 ProSitePatterns DNA polymerase family X signature. 384 403 IPR019843 GO:0016779
Vvi1g0882 547 MobiDBLite consensus disorder prediction 139 166 - -
Vvi1g0882 547 FunFam DNA polymerase 10 110 - -
Vvi1g0882 547 FunFam DNA polymerase 477 545 - -
Vvi1g0882 547 Gene3D BRCT domain 10 110 IPR036420 -
Vvi1g0882 547 MobiDBLite consensus disorder prediction 167 191 - -
Vvi1g0882 547 MobiDBLite consensus disorder prediction 110 191 - -
Vvi1g0882 547 SUPERFAMILY PsbU/PolX domain-like 297 352 - -
Vvi1g0882 547 Gene3D Beta Polymerase, domain 2 354 476 IPR043519 -
Vvi1g0882 547 PRINTS DNA-polymerase family X pol beta-like signature 382 401 IPR002008 GO:0003677|GO:0006281
Vvi1g0882 547 PRINTS DNA-polymerase family X pol beta-like signature 342 356 IPR002008 GO:0003677|GO:0006281
Vvi1g0882 547 PRINTS DNA-polymerase family X pol beta-like signature 270 287 IPR002008 GO:0003677|GO:0006281
Vvi1g0882 547 PRINTS DNA-polymerase family X pol beta-like signature 459 467 IPR002008 GO:0003677|GO:0006281
Vvi1g0882 547 PRINTS DNA-polymerase family X pol beta-like signature 474 481 IPR002008 GO:0003677|GO:0006281
Vvi1g0882 547 PRINTS DNA-polymerase family X pol beta-like signature 528 545 IPR002008 GO:0003677|GO:0006281
Vvi1g0882 547 MobiDBLite consensus disorder prediction 114 138 - -
Vvi1g0882 547 Pfam Helix-hairpin-helix domain 219 284 IPR010996 -
Vvi1g0882 547 Gene3D DNA polymerase, thumb domain 477 545 IPR037160 -
Vvi1g0882 547 FunFam DNA polymerase 206 293 - -
Vvi1g0882 547 Gene3D - 209 292 IPR027421 -
Vvi1g0882 547 ProSiteProfiles BRCT domain profile. 14 108 IPR001357 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0882 K03512 - vvi:100248348 1074.69