Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0880 ATGTACTCAATAACATTGGTATCCCATGTGATCAGGCCCTTCTGGGGCCGAGGAGAAATTGAACTGCTGCCGCAACTGATCCCATTCTATAAAGGAGGATACTGCAGGCGGAATGAAACACAGCAGCAGAAAGGAGAAAAAGAAATGGAGTACAGAGGTCATGTAGTAGTGGTACCTTACCCCAGCCAAGGACACATCAATCCTCTCCTCCAATTCGCCAAACGCCTAGCCTCGAAGGGTGTCAAAGCTACACTAGCAACAACCCGTTACACAGTCAACTTCATCCGTGCACCAAATATTGGGGTGGAGCCCATCTCTGATGGCTTCGATGAGGGTGGTTTTGCTCAAGCTGGAAAGGAGGATGTATACCTCAATGCATTCAAGGCCAACGGCTCCAGAACTCTGTCCCAACTCATCCACAAGCACCAACACACTACCCACCCAATCAATTGTGTTTTATACGATTCATTTCTCCCATGGGCTCTAAATGTTGCCAGGGAACATGGCATACACGGAGCTGCGTTTTTCACAAACTCCGCCACCGTGTGCGCCATATTCTGCCGCATACACCATGGCCTACTTACTTTGCCGGTGAAGCTAGAGGACACTCCCTTGTTGCTGCCTGGTTTGCCTCCATTGAACTTCCCAGACTTGCCAACTTTTGTTAAGTTCCCAGAAAGCTACCCGGCTTACTTGACTATGAAATTGAGCCAGTATTCTAATTTGGACAACGTTGATTGGGTAATTGGGAACTCCTTTGAGGAATTAGAAGGCGAGGCGGCAAAATCCATATCAGAGCTCTGGCCAGGGATGTTGGTCGGTCCAATGGTGCCGTCAGCCTACCTGGATGGCCGGATTGATGGGGACAAAGGATATGGAGCGAGTCTATGGAAGCCACTGAGCGACAAGTGCATCAAATGGCTGGAAAAGAAGGCACCCCAGTCGGTGGTGTACGTCTCCTTTGGAAGTATGGTGTCACTGTCGGCAAAACAAATGGAAGAGATCGCGTGGGGATTGAAGGCGAGTGGGCAACATTTCCTGTGGGTGGTGAAGGAGTCCGAACGAAGTAAATTGCCAGAAGGATTCATAGACTCAGCAGAGGAGCAGGGTCTAATCGTGACATGGTGCAACCAACTGGAAATGCTAGCACATGAAGCCATCGGGTGCTTTGTATCACACTGTGGGTGGAATTCAACGCTAGAAGGGCTGAGCTTGGGTGTGCCCATGGTGGGAGTGCCACAATGGACTGACCAACACACTGATGCTAAGTTTGTGGAGGAGATTTGGGAAGTGGGGGTGAGAGCTAAGGAGGATGAGTTGGGAATTGTAAGGAGAGGAGAACTCTTAATGTGCTTGAAGGAAGTAATGGTAGGGAAGAGAAGCGAAGAGATCAAGAGGAATGCCGGTAAATGGAGGCGATTGGCCAAGGAAGCCATCAGTGAAGGAGGGAGCTCTGATCAATGCATTAACCAATTTGTGGAGCAGTTGATGTCTGCAGCTAAGAAAGGAGAAAGTATTTGA 1521 0.4931 MYSITLVSHVIRPFWGRGEIELLPQLIPFYKGGYCRRNETQQQKGEKEMEYRGHVVVVPYPSQGHINPLLQFAKRLASKGVKATLATTRYTVNFIRAPNIGVEPISDGFDEGGFAQAGKEDVYLNAFKANGSRTLSQLIHKHQHTTHPINCVLYDSFLPWALNVAREHGIHGAAFFTNSATVCAIFCRIHHGLLTLPVKLEDTPLLLPGLPPLNFPDLPTFVKFPESYPAYLTMKLSQYSNLDNVDWVIGNSFEELEGEAAKSISELWPGMLVGPMVPSAYLDGRIDGDKGYGASLWKPLSDKCIKWLEKKAPQSVVYVSFGSMVSLSAKQMEEIAWGLKASGQHFLWVVKESERSKLPEGFIDSAEEQGLIVTWCNQLEMLAHEAIGCFVSHCGWNSTLEGLSLGVPMVGVPQWTDQHTDAKFVEEIWEVGVRAKEDELGIVRRGELLMCLKEVMVGKRSEEIKRNAGKWRRLAKEAISEGGSSDQCINQFVEQLMSAAKKGESI* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0880 506 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 294 459 IPR002213 GO:0008194
Vvi1g0880 506 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 54 486 - -
Vvi1g0880 506 FunFam Glycosyltransferase 294 477 - -
Vvi1g0880 506 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 54 498 - -
Vvi1g0880 506 Gene3D Glycogen Phosphorylase B; 291 477 - -
Vvi1g0880 506 CDD GT1_Gtf-like 54 496 IPR002213 GO:0008194
Vvi1g0880 506 Gene3D Glycogen Phosphorylase B; 57 487 - -
Vvi1g0880 506 FunFam Glycosyltransferase 57 293 - -
Vvi1g0880 506 ProSitePatterns UDP-glycosyltransferases signature. 375 418 IPR035595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0880 Vvi-Chr1 9395296 9396993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0880 45 496 Glycosyltransferase AT1G24100 52.620 2.28e-170 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0880 K11820 - vvi:100260341 1028.08