Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0878 ATGGCTTCCACTTCCACTTCCGCCATTTGCCTCTACTCTCACCCAATGATTTCACATCGTGCCCGCCCCCGGAATTTGCGGAGCCAGGTTTTGGGCAGCTCATGGTGGGGCTATTGTGCGCTTTTACCCACTAGCGTCTATGTGAGTAGTATTAGGCATTATAGATTCAGGACATTGGTCACAGTGGCTGCTTCCACGGCTGATGGAGTTCCGAGGCGGCCGGTCAGTGGTCGGAGAGTTTTCAAGCAATCTCAAGGCCAAGGGCCTTTAAGCCCTGTTCCCGTTAGGGAGATTGCCTCGTTTGTTGTTCCGGCCAGTTTGTTTTTCGCCGTCACTTTCGTTTTATGGAGATTGGTGGAGAAGATTCTGCTGCCAAAATCATCAAGGTCTTCATCACTAGAAAAGAAATCCTCCTCACCAGGAGTGAAATGGTCCTTTGCCCCAGGTACAAATTTGCTAGCAGGTCTCACTGCAAAGTTTGACAGAGAGTCCAAGCAGAAGCTCAATGAATTTGCCAAAGAAATTAGGTCATTTGGAAGTGTTGACATGTCAGGACGAAATTTTGGAGATGAAGGACTCTTTTTTCTTGCTGAGAGCTTAGCCTACAATCAGAATGCGGAGGAAGTGAGTTTTGCTGCTAATGGAATAACTGCAGCTGGATTGAAAGCCTTTGATGGTGTTCTTCAATCAAACATTGTGTTAAAGACCCTTGATCTTTCAGGGAACCCTATTGGGGATGAAGGAGCTAAGTGCCTATGTGATATATTGATTGATAATGCTGGTATTCAAAAGCTTCAACTAAACAGTGCTGACCTGGGGGATGAGGGGGCAAAGGCTATTGCAGAGATGTTGAAGAAAAATTCAAGCTTGCGTATCGTTGAGCTTAACAACAATATGATTGATTATTCTGGATTTACAAGTCTTGGTGGAGCGCTTCTTGAGAATAACACTATAAGAAATATTCATCTCAATGGCAACTATGGTGGTGCTCTGGGGGTTGCCGCTCTGGCGAAAGGGCTTGAAGCGAATAAGTCTTTGAGGGAACTTCATTTACATGGAAATTCTATTGGAGATGAAGGAGTCCGTGTTTTGATGTCTGGATTATCTTCACATAAAGGAAAACTTACACTTCTAGACATTGGCAACAATGAAATTAGCTCCAGAGGTGCTTTTCACGTTGCTGAATATATCAAGAAAGCCAAGAGTTTGCTATGGTTGAATCTTTACATGAATGACATTGGAGATGAGGGAGCGGAAAAAATCGCAGATGCTTTGAAGGAAAACCGCTCAATAGCAACTATAGACCTGGGGGGAAATAACATCCATGCAAAGGGTGTGAGTAAAATAGCTGGAGTATTGAAAGACAATACAGTCATTACAACTTTGGAATTAGGTTATAATCCCATAGGGCCTGAAGGAGCAAAGGCTTTATCTGAAGTTCTGAAGTTTCATGGGAAGATCAAAACCCTGAAGCTTGGTTGGTGTCAGATTGGAGCAAAGGGTGCAGAGTTCATTGCAGATACTTTAAAGTATAACACTACCATTTCAACTCTGGACTTGCGGGCAAATGGGCTTAGAGATGAAGGTGCAGTCTGTCTAGCTCGCAGCATGAAAGTTGTTAATGAGGCTTTAGCTTCACTTGATTTAGGGTTTAATGAAATAAGAGATGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGACAAAGTGCTCTGACAGATGCAAGAGATCATGTATATGAAATGAGTGAAAAGGAAGTCAACATTTTTTTCTAG 1836 0.4336 MASTSTSAICLYSHPMISHRARPRNLRSQVLGSSWWGYCALLPTSVYVSSIRHYRFRTLVTVAASTADGVPRRPVSGRRVFKQSQGQGPLSPVPVREIASFVVPASLFFAVTFVLWRLVEKILLPKSSRSSSLEKKSSSPGVKWSFAPGTNLLAGLTAKFDRESKQKLNEFAKEIRSFGSVDMSGRNFGDEGLFFLAESLAYNQNAEEVSFAANGITAAGLKAFDGVLQSNIVLKTLDLSGNPIGDEGAKCLCDILIDNAGIQKLQLNSADLGDEGAKAIAEMLKKNSSLRIVELNNNMIDYSGFTSLGGALLENNTIRNIHLNGNYGGALGVAALAKGLEANKSLRELHLHGNSIGDEGVRVLMSGLSSHKGKLTLLDIGNNEISSRGAFHVAEYIKKAKSLLWLNLYMNDIGDEGAEKIADALKENRSIATIDLGGNNIHAKGVSKIAGVLKDNTVITTLELGYNPIGPEGAKALSEVLKFHGKIKTLKLGWCQIGAKGAEFIADTLKYNTTISTLDLRANGLRDEGAVCLARSMKVVNEALASLDLGFNEIRDEGAFAIAQALKANEDVAVTSLNLASNFLTKFGQSALTDARDHVYEMSEKEVNIFF* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0878 611 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 264 401 - -
Vvi1g0878 611 SUPERFAMILY RNI-like 180 370 - -
Vvi1g0878 611 SUPERFAMILY RNI-like 323 598 - -
Vvi1g0878 611 Pfam Leucine Rich repeat 456 478 IPR001611 GO:0005515
Vvi1g0878 611 Pfam Leucine Rich repeat 263 281 IPR001611 GO:0005515
Vvi1g0878 611 Pfam Leucine Rich repeat 406 422 IPR001611 GO:0005515
Vvi1g0878 611 Pfam Leucine Rich repeat 428 450 IPR001611 GO:0005515
Vvi1g0878 611 Pfam Leucine Rich repeat 343 364 IPR001611 GO:0005515
Vvi1g0878 611 Pfam Leucine Rich repeat 487 506 IPR001611 GO:0005515
Vvi1g0878 611 Pfam Leucine Rich repeat 511 534 IPR001611 GO:0005515
Vvi1g0878 611 Pfam Leucine Rich repeat 231 253 IPR001611 GO:0005515
Vvi1g0878 611 Pfam Leucine Rich repeat 544 563 IPR001611 GO:0005515
Vvi1g0878 611 Gene3D Ribonuclease Inhibitor 479 609 IPR032675 -
Vvi1g0878 611 Gene3D Ribonuclease Inhibitor 156 313 IPR032675 -
Vvi1g0878 611 SMART LRR_RI_2 343 370 - -
Vvi1g0878 611 SMART LRR_RI_2 259 286 - -
Vvi1g0878 611 SMART LRR_RI_2 512 539 - -
Vvi1g0878 611 SMART LRR_RI_2 372 399 - -
Vvi1g0878 611 SMART LRR_RI_2 456 483 - -
Vvi1g0878 611 SMART LRR_RI_2 428 455 - -
Vvi1g0878 611 SMART LRR_RI_2 231 258 - -
Vvi1g0878 611 SMART LRR_RI_2 287 314 - -
Vvi1g0878 611 SMART LRR_RI_2 484 511 - -
Vvi1g0878 611 SMART LRR_RI_2 541 568 - -
Vvi1g0878 611 SMART LRR_RI_2 315 342 - -
Vvi1g0878 611 SMART LRR_RI_2 400 427 - -
Vvi1g0878 611 FunFam RNI-like superfamily protein 297 377 - -
Vvi1g0878 611 Gene3D Ribonuclease Inhibitor 314 478 IPR032675 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0878 K22614 - vvi:100258814 1148.27