Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0853 ATGGGAGGCGTACCTGATCCAAAATCGAAGCCCTCCCACTCTCACCCTAAGGATGACGAATATCTTAGTTGCGTCATTCCCAAGCGCATAGCCGTCTTCGAATCCATCAAAGCTCAACAAATCGCTCATCGCCAATCCATTTCCGGCGACCCCATCAAGATAACTTTGCCGGACGGGACAGTGAAGGAAGGGAAGAAATGGGCGACTACACCTCTAGATATTGCCAGAGAGATATCAAAAGGTTTGGCCTCCAATGCGTTGATTTCTCTAGTGAATGGAATTTTGTGGGACATGTCCAGGCCCCTGGAGGGCGACTGCGAGCTTAAGTTGTTCACATTCGATAGTGATGAAGGTCGGGACACTTTTTGGCATTCGAGTGCACACATTCTGGGACAGGCCCTTGAAGTGGCATATGGTTGCAAATTGTGCATTGGGCCCTGTACCACAAGAGGAGAGGGTTTCTATTATGATGCATTTTATGGTGAACTGGGCTTGAATGAAGATCACTTCAAAGAAATTGAATCAGGCGCATTAAAAGCTGTTGGGGAAAAGCAACCTTTTGAGCGCATTGAAGTGTCAAGGAATCAGGCTCTTGAGTTGTTTTCTGAAAATAGTTTTAAGATTGAAATCATCAATGACTTACCTGAAGACAAAACTATCACAGTATACAGATGTGGGCCATTGGTTGATCTGTGCCGTGGGCCCCATATACCAAATACATCTTTTGTTAAAGCATTTGCCTGTTTGAAGGCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGAGTTTATGGGATATCTTATCCTGATTCAAAACGATTGAAGGAATATATTGCTCGAATTGAAGAAGCAAAGAAATATGACCACAGATTGTTGGGTGTAAAACAGGAGCTTTTCTTCTGTCACCCACTTAGCCCAGGAAGCTGGTTCTTCCTTCCACATGGGGGTCGAATTTACAACAAGTTGATGGAGTTTATAAAAGCTCAATACAGGGAAAGAGGTTACCATGAGGTTTTCTCACCAACTATGTATAATATGCAACTTTGGGAAACATCTGGTCATGCTGCTAATTACAAGGAGAATATGTTTGTATTTGAGGTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCACTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAGAACTTCCTCTTCGGCTAGCCGATTTTGGGGTCTTGCATCGAAATGAAGCCAGTGGTGCACTTACTGGATTAACTCGTGTCAGGAGGTTTCAGCAGGATGATGCACATATCTTCTGCAGGGAATCCCAGATAAAGGATGAAGTCATGGGCGTCTTGGAGTTCATCAATTATGCCTATAACATATTTGGGTTCACTTATGAGCTGAAGCTATCAACAAGGCCAGAGAAATACCTTGGAGATTTAGAAACATGGGAAAAAGCTGAGGCTGCACTCACGGAAGCTTTGGATCAGAGTGGGAAGCCGTGGGAGATAAATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTTTCTGATGCATTAAGTAGGAAATTCCAGTGTGCAACATTACAGCTGGACTTTCAGCTTCCTTCTCGTTTTGATTTGTCTTACTCAGCTGAGGATGAAGCTAAGAGGGAGAGACCTGTCATGATACACCGAGCCATCCTAGGGTCTGTTGAGCGTATGTTTGCTATACTTTTGGAGCACTACAAGGGGAAATGGCCCTTCTGGCTTAGTCCACGTCAGGCGATTGTTTGCCCTGTGTCAGAGAAATCTCAGCCATATGCACTTAAGGTAAGGGATCAGATTCATCAAGCTGGTTATTATGTTGATGTCGATACAACTGATAGAAAGATCCAGAAAAAGGTACGAGAAGCTCAGTTGGCCCAGTACAACTATATATTGGTTGTTGGCGAGGAGGAAGCCAACACAGGACAGGTGAGTGTCCGGGTAAGAGATAAGGGAGACCATTCGGTTATGAGCATGGAAAACCTCCTCAGTTTCTTCAAGAGTGAAATTGCAGCTTTTCATTAG 2061 0.4381 MGGVPDPKSKPSHSHPKDDEYLSCVIPKRIAVFESIKAQQIAHRQSISGDPIKITLPDGTVKEGKKWATTPLDIAREISKGLASNALISLVNGILWDMSRPLEGDCELKLFTFDSDEGRDTFWHSSAHILGQALEVAYGCKLCIGPCTTRGEGFYYDAFYGELGLNEDHFKEIESGALKAVGEKQPFERIEVSRNQALELFSENSFKIEIINDLPEDKTITVYRCGPLVDLCRGPHIPNTSFVKAFACLKASSAYWRGNKDRESLQRVYGISYPDSKRLKEYIARIEEAKKYDHRLLGVKQELFFCHPLSPGSWFFLPHGGRIYNKLMEFIKAQYRERGYHEVFSPTMYNMQLWETSGHAANYKENMFVFEVEKQEFGLKPMNCPGHCLMFEHRVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVMGVLEFINYAYNIFGFTYELKLSTRPEKYLGDLETWEKAEAALTEALDQSGKPWEINEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPSRFDLSYSAEDEAKRERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALKVRDQIHQAGYYVDVDTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKGDHSVMSMENLLSFFKSEIAAFH* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0853 686 Hamap Threonine--tRNA ligase [thrS]. 117 684 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vvi1g0853 686 FunFam Threonine--tRNA ligase mitochondrial 1 273 401 - -
Vvi1g0853 686 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 373 579 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi1g0853 686 CDD ThrRS_anticodon 589 679 IPR047246 -
Vvi1g0853 686 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 322 584 IPR006195 -
Vvi1g0853 686 CDD TGS_ThrRS 52 117 - -
Vvi1g0853 686 SUPERFAMILY ThrRS/AlaRS common domain 113 291 IPR018163 GO:0000166
Vvi1g0853 686 CDD ThrRS_core 293 589 IPR033728 -
Vvi1g0853 686 Gene3D - 583 685 IPR036621 -
Vvi1g0853 686 PANTHER THREONINE-TRNA LIGASE 24 685 - -
Vvi1g0853 686 SUPERFAMILY TGS-like 52 113 IPR012676 -
Vvi1g0853 686 Pfam Anticodon binding domain 591 680 IPR004154 -
Vvi1g0853 686 SMART tRNA_SAD_4 220 269 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vvi1g0853 686 FunFam Threonine--tRNA ligase mitochondrial 1 583 686 - -
Vvi1g0853 686 Gene3D - 50 111 IPR012675 -
Vvi1g0853 686 SUPERFAMILY Class II aaRS ABD-related 577 682 - -
Vvi1g0853 686 FunFam Threonyl-tRNA synthetase, mitochondrial 116 273 - -
Vvi1g0853 686 FunFam Threonine--tRNA ligase, cytoplasmic 50 111 - -
Vvi1g0853 686 NCBIfam threonine--tRNA ligase 123 681 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vvi1g0853 686 SUPERFAMILY Class II aaRS and biotin synthetases 293 576 IPR045864 -
Vvi1g0853 686 FunFam Probable threonine--tRNA ligase, cytoplasmic 409 582 - -
Vvi1g0853 686 Pfam TGS domain 52 112 IPR004095 -
Vvi1g0853 686 PRINTS Threonyl-tRNA synthetase signature 557 570 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vvi1g0853 686 PRINTS Threonyl-tRNA synthetase signature 584 596 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vvi1g0853 686 PRINTS Threonyl-tRNA synthetase signature 379 407 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vvi1g0853 686 PRINTS Threonyl-tRNA synthetase signature 513 541 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vvi1g0853 686 PRINTS Threonyl-tRNA synthetase signature 412 435 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vvi1g0853 686 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 220 269 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vvi1g0853 686 Gene3D - 115 273 - -
Vvi1g0853 686 Gene3D Bira Bifunctional Protein; Domain 2 275 582 IPR045864 -
Vvi1g0853 686 ProSiteProfiles TGS domain profile. 50 112 IPR004095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0853 Vvi-Chr1 9040679 9082566 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0853 K01868 - vvi:100265542 1397.1