Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0850 ATGAATCCCTTCTCGTCCGGAACGCGCCTGAGGGACATGATTCGGGCTATCCGTGCTTGCAAAACCGCAGCAGAGGAACGTGCTGTTGTAAGAAAGGAATGTGCTGCTATTCGTGCATCAGTCAGTGAAAATGATCATGACTATAGGCACCGTAACCTAGCAAAGCTCATGTTCATTCACATGCTTGGTTACCCCACACATTTTGGTCAAATGGAGTGCCTGAAATTGATTGCAGCGGCTGGATTTCCGGAAAAGAGAATAGGATATCTTGGCCTCATGTTGCTTCTTGATGAAAGGCAAGAAGTTCTTATGTTGGTTACAAACTCATTAAAACAAGATCTCAATCATAACAACCAGTACATTGTGGGACTTGCTCTTTGTGCTCTGGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTTGCACCTGAAGTGGAGAGATTGATGCAATTTCGAGATCCAAATATTCGGAAAAAAGCAGCATTATGCTCTATAAGGATTATAAGGAAAGTTCCAGATCTGGCAGAAAATTTTATGCATCCTGCTACCAACTTACTTAAAGAAAAGCACCATGGAGTTTTGATAACTGGAGTTCAGCTTTGTACAGAGATATGCAAAGTCAGCGTGGAAGCCCTTGAACATTTTAGGAAGAAGTGCACAGAGGTTTTGGTCAAAGTTCTAAAGGATGTTGTGAACAGTCCTTATGCACCTGAGTACGATATTGCTGGGATTACAGACCCTTTCCTCCATATCAGATTGCTTAGGCTTTTACGGGTGCTGGGCCAAGGTGATGCAGATGCTAGTGACTGTATGAATGACATTCTTGCTCAGGTGGCAACAAAAACTGAGTCAAACAAAAATGCTGGGAATGCCATTTTGTATGAATGTGTTGAAACTATTATGAGCATTGAAGATACTAGTGGCTTACGTGTGCTTGCCATCAATATCTTGGGAAGATTCTTGTCAAATCGTGACAACAATATCAGATATGTTGCATTGAATATGCTGATGAAGGCTATTACAGTAGATGCGCAAGCAGTGCAGAGGCATCGGGCAACAATTTTGGAATGTGTAAAGGATTCAGATGCTTCAATTCGGAAAAGGGCCCTTGAACTTATTTATGTTCTAGTGAATGACAGCAATGTGAAGCCTTTGGCAAAAGAGCTAATTGATTATCTTGAAGTAAGCGATCCAGAATTCAAGGGAGATCTGACCGCCAAAATTTGCTCAATTGTTGAAAAGTTTTCCCCTGAGAAAATATGGTACATTGATCAGATGCTCAAGGTTCTTTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTCTGGCATGCCCTTATTGTTGTAATAAGCAATGCTTCTGACCTCCATGGATATACAGTAAGGTCCCTTTACAGAGCATTCCAAGCATCAGTGGAACAGGAATGCCTTGTACGAGTGGCGGTCTGGTGCATTGGAGAATATGGTGAAATGTTAGTCAATAATGTTGGAATGCTTGATATAGAGGAACCTATAACTGTAACAGAGTCTGATGCTGTGGATGTCATTGAGATTGCCATTAAGCGCCATACCTCAGATCTCACAACTCGAGCTATGGCTTTGATTGCTCTCTTAAAGCTTTCATGTCGTTTCCCATCTTGTTCAGAGAGGATAAGGGATATAATTGTCCAGTGTAAAGGAAGCCTTGTGCTTGAATTGCAGCAGAGATCCATTGAATTTAATTCCATTATTGGGAAGCATCAAAATATCAGGTCTGTGCTGGTAGAAAGGATGCCAGTTCTGGATGAGGCAACTTACAATGGAAGGAGGGCTGGTTCTATGCCAGCAACTGTTTCAATGTCAAGTGGGGCTTCACTTAATCTTCCAAATGGAGTTGCCAAACCCCCTGCTGCTCCTCTTGTAGATTTACTTGATCTAAGTTCAGATGATACCCCTGCACCTAGTTCTTCTGGTGGTGATTTCCTTCATGATCTTCTTGGTGTTGACTTATCTGTGGGTTCATCATTGTCAGGTATGACTCAGGTTCCAAAAGCTGGTACAGATGTTCTCCTGGATCTTCTGTCAATTGGAACACCTCCTCCGGCACAAAGCAGCTTATCTACACCTGATATTTTATCTTCTAGTCAAGATAACAAGATGCCAGCTCCCACATTAGAAAGACTGTCATCACCTTCTTCAATATCCATTCAAGCCTCATCTCCTGCAGGGGCTGCTCCTATGATGGATTTGTTGGATGGCTTTGCCCCCAACCTACCATTGCCTGAGGACAATGGTCCTGTTTATCCATCTATAGTCGCATTTGAGAGCAGTGCCTTGAGGCTAACGTTCAACTTCTCCAAGACACCTGCAAATCCGCAAACAACATTGGTCCAGGCCAGTTTTACAAATTTGTCACCTAATATCTTTACAGATTTTATTTTCCAGGCAGCAGTCCCAAAGTTTCTTCAGTTGCACTTAGATTCAGCCAGTGGCAACACACTTCCTGCAAGTGGAAATGGGTCTATCACACAAAATTTGCGAGTTACTAACAGCCTACATGGGAAGAAACCTCTTGTCATGCGCATAAGGATAGCTTACAAGATGAACAACAAGGATGTCTTGGAGGAAGGACAAATCAACAATTTCCCTCGTGACTTATGA 2637 0.424 MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECAAIRASVSENDHDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIAAAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHNNQYIVGLALCALGNICSAEMARDLAPEVERLMQFRDPNIRKKAALCSIRIIRKVPDLAENFMHPATNLLKEKHHGVLITGVQLCTEICKVSVEALEHFRKKCTEVLVKVLKDVVNSPYAPEYDIAGITDPFLHIRLLRLLRVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDTSGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDSDASIRKRALELIYVLVNDSNVKPLAKELIDYLEVSDPEFKGDLTAKICSIVEKFSPEKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRSLYRAFQASVEQECLVRVAVWCIGEYGEMLVNNVGMLDIEEPITVTESDAVDVIEIAIKRHTSDLTTRAMALIALLKLSCRFPSCSERIRDIIVQCKGSLVLELQQRSIEFNSIIGKHQNIRSVLVERMPVLDEATYNGRRAGSMPATVSMSSGASLNLPNGVAKPPAAPLVDLLDLSSDDTPAPSSSGGDFLHDLLGVDLSVGSSLSGMTQVPKAGTDVLLDLLSIGTPPPAQSSLSTPDILSSSQDNKMPAPTLERLSSPSSISIQASSPAGAAPMMDLLDGFAPNLPLPEDNGPVYPSIVAFESSALRLTFNFSKTPANPQTTLVQASFTNLSPNIFTDFIFQAAVPKFLQLHLDSASGNTLPASGNGSITQNLRVTNSLHGKKPLVMRIRIAYKMNNKDVLEEGQINNFPRDL* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0850 878 SUPERFAMILY ARM repeat 25 593 IPR016024 -
Vvi1g0850 878 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 11 866 - -
Vvi1g0850 878 Pfam Adaptin N terminal region 27 578 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vvi1g0850 878 Pfam Adaptin C-terminal domain 761 875 IPR008152 GO:0006886|GO:0016192
Vvi1g0850 878 Gene3D - 748 877 - -
Vvi1g0850 878 SUPERFAMILY Clathrin adaptor appendage domain 732 877 IPR013041 -
Vvi1g0850 878 SMART alpha_adaptinc2 755 875 IPR008152 GO:0006886|GO:0016192
Vvi1g0850 878 MobiDBLite consensus disorder prediction 692 731 - -
Vvi1g0850 878 FunFam AP-1 complex subunit gamma 2 594 - -
Vvi1g0850 878 Gene3D - 2 594 IPR011989 -
Vvi1g0850 878 FunFam AP-1 complex subunit gamma 748 878 - -
Vvi1g0850 878 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 758 875 IPR008153 -
Vvi1g0850 878 PIRSF AP1_gamma 6 878 IPR017107 GO:0005794|GO:0016192|GO:0030121
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0850 Vvi-Chr1 8993113 9017689 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0850 K12391 - vvi:100241508 1634.39