Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0842 ATGGCTGAACATACCAGAGAGGGCGAAGAGAATGGGGTCAGCGGTTGCATGTCTTCTGTGATTCCTGGGTGGTTTTCGGAGATTAGCCCAATGTGGCCTGGAGAGGCACATTCCTTAAAGGTAGAAAAGATCTTATTTCAGGAGAAATCTGACTACCAGAATGTAATGGTCTTTCAGTCAGCAACATATGGAAAGGTTCTCGTTTTGGATGGGGTGATTCAACTCACAGAGAGGGATGAATGCGCATATCAAGAAATGATCACTCACCTGCCACTTTGCTCAATTCCAAACCCAAAGAAGGTTTTGGTCATTGGCGGAGGAGATGGTGGTGTCCTGCGAGAAGTGGCCCGACATTCTTCTGTTGAGCAGATAGATATCTGTGAAATTGATGGGATGGTTGTCGATGTTTCTAAAAAATTTTTCCCTGACGTAGCAATTGGGTATGATGATCCCCGTGTGAATCTCCATATTGGCGATGGGGTTGCATTTATGAAGAATGCACCTGAAGGAACTTATGATGCTGTTATAGTAGATTCTTCTGACCCAATAGGTCCTGCACAGGAGCTTTTTGAGAAGCCTTTCTTTGCGTCAGTGGCAAGGGCTCTTCGTCCAGGGGGAGTTGTGTGTACTCAGGCAGAAAGTATATGGCTTCATATGCACATTATTGAAGACATTGTCACAAACTGCCGCCAGATATTCAAAGGCTCTGTCAACTATGCATGGACAACAGTTCCTACATACCCAAGTGGGGTGATTGGATTCATGCTGTGCTCTACTGAGGGACCTGCTGTTGATTTCAAGCATCCTGTCAATCCCATTGATGCAAATGAGAGTGCTTGCAAGTCAAGTCGACCTTTGAAATTTTACAACTCAGAGATTCACGCTGCAGCTTTCTGTTTGCCATCTTTTGCAAAGAAGGTGATTGATTCAAAAACTACATGA 942 0.4459 MAEHTREGEENGVSGCMSSVIPGWFSEISPMWPGEAHSLKVEKILFQEKSDYQNVMVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEQIDICEIDGMVVDVSKKFFPDVAIGYDDPRVNLHIGDGVAFMKNAPEGTYDAVIVDSSDPIGPAQELFEKPFFASVARALRPGGVVCTQAESIWLHMHIIEDIVTNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPAVDFKHPVNPIDANESACKSSRPLKFYNSEIHAAAFCLPSFAKKVIDSKTT* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0842 313 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 101 114 IPR030373 -
Vvi1g0842 313 Gene3D Vaccinia Virus protein VP39 75 313 IPR029063 -
Vvi1g0842 313 Pfam Spermine/spermidine synthase domain 80 267 - -
Vvi1g0842 313 PIRSF Spermidine_synth 13 313 IPR030668 GO:0006595
Vvi1g0842 313 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 20 309 IPR029063 -
Vvi1g0842 313 NCBIfam spermidine synthase 24 303 IPR001045 GO:0003824
Vvi1g0842 313 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 22 259 IPR030374 -
Vvi1g0842 313 FunFam Spermidine synthase 1 75 313 - -
Vvi1g0842 313 Hamap Polyamine aminopropyltransferase [speE]. 23 309 IPR001045 GO:0003824
Vvi1g0842 313 FunFam Spermidine synthase 1 15 74 - -
Vvi1g0842 313 Pfam Spermidine synthase tetramerisation domain 23 77 IPR035246 -
Vvi1g0842 313 Gene3D Spermidine synthase, tetramerisation domain 15 74 IPR037163 -
Vvi1g0842 313 CDD AdoMet_MTases 100 211 - -
Vvi1g0842 313 PANTHER SPERMIDINE/SPERMINE SYNTHASE 14 311 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0842 Vvi-Chr1 8887052 8891172 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0842 K00797 - vvi:100257112 632.869