Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0841 ATGTCCGAGTTCAAGGCAGCTCTTTCTGATCCTTTCCTGGCAGATTTGGAGGAATTGTCAGACAATGAAGCCGATCTTGCTAATGAAGATGACATGGGTGTTGGAAACATGGAAGAAGACGATGATGGGGAGATGGCAGATATTGAAGCTCTTAATTATGATGATCTGGACAGTGTCTCCAAATTACAGAAAACACAACGTTACATTGACATTATGCAGAAAGTTGAAGATGCGCTAGAGAAGGGGTCTGATATGTCAAATCATGGGATAGTTTTGGAAGATGATCCTGAATACCAGTTGATAGTGGATTGCAATGCATTGTCAGTTGATATTGAGAATGAAATTGTTATTATCCACAACTTTATCCGTGATAACTACCGTTTGAAATTTCCGGAACTTGAGTCACTTGTGCATCACCCAATTGATTATGCTCGAGTTGTTAAGAAGATTGGGAATGAAATGGATTTAACCCTTGTTGACCTCGAGGGGCTTTTACCTTCAGCTATCATTATGGTTGTTTCAGTTACTGCATCAACTACTAGTGGCAAGCCACTTCCGGAGGAAAACCTTAAAAAGACAGTTGATGCATGTGACAGAGCTCTTGCTCTAGATTTAGCTAAGAAAAAGGTCCTTGATTTTGTAGAAAGCAGAATGGGTTATATTGCGCCCAATCTTTCTGCTATAGTTGGCAGTGCTGTTGCTGCTAAACTTATGGGGACTGCTGGTGGTCTCACAGCATTAGCTAAGATGCCAGCCTGTAATGTTCAGCTTCTTGGTGCCAAGAAAAAGAACCTTGCAGGGTTTTCTACTGCAACATCCCAATTTCGGGTAGGTTATATCGAGCAAACAGAGATATTTCAGAGCACACCCCCTTCCTTGAGGATGCGAGCCTGCCGGCTTTTGGCTGCAAAATCAACACTTTCTGCACGAGTAGATTCTACAAGGGGAGATCCTACAGGGAAAACTGGAAGAACCTTGCGAGAAGAGATCCTTAAGAAGATTGAGAAATGGCAAGAGCCACCTCCTGCAAAACAACCTAAACCTCTTCCAGTTCCTGATTCTGAGCCTAAAAAGAAGAGAGGTGGTCGTCGGCTAAGGAAGATGAAGGAGAGGTATGCTATAACGGACATGAGGAAGCTGGCCAATAGGATGCAATTTGGTGTTCCTGAAGAGAGTTCTTTAGGGGATGGACTGGGGGAAGGATATGGAATGCTCGGTCAGGCTGGGAATGGGAAGTTGCGTGTATCAGTTGGTCAGAGTAAACTTGCTGCCAAAGTTGCTAAAAAGTTCAAGGAAAAGCAATATGGAAGCAGTGGTGCTACCTCAGGACTGACTTCAAGTTTGGCCTTCACACCTGTGCAGGGAATTGAGCTGTCAAATCCCCAGGCTCATGCAAATCAGCTTGGAAGTGGAACCCAAAGTACCTACTTTTCTGAAATAGGAACCTTTTCAAAGATCAAGAGGACCTGA 1470 0.4374 MSEFKAALSDPFLADLEELSDNEADLANEDDMGVGNMEEDDDGEMADIEALNYDDLDSVSKLQKTQRYIDIMQKVEDALEKGSDMSNHGIVLEDDPEYQLIVDCNALSVDIENEIVIIHNFIRDNYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEENLKKTVDACDRALALDLAKKKVLDFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLTALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPSLRMRACRLLAAKSTLSARVDSTRGDPTGKTGRTLREEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGNGKLRVSVGQSKLAAKVAKKFKEKQYGSSGATSGLTSSLAFTPVQGIELSNPQAHANQLGSGTQSTYFSEIGTFSKIKRT* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0841 489 ProSiteProfiles Nop domain profile. 221 339 IPR002687 -
Vvi1g0841 489 FunFam U4/U6 small nuclear ribonucleoprotein PRP31 83 221 - -
Vvi1g0841 489 FunFam U4/U6 small nuclear ribonucleoprotein Prp31 222 347 - -
Vvi1g0841 489 Gene3D Nop domain 222 347 IPR042239 -
Vvi1g0841 489 Gene3D - 83 221 - -
Vvi1g0841 489 MobiDBLite consensus disorder prediction 19 40 - -
Vvi1g0841 489 Pfam Prp31 C terminal domain 344 461 IPR019175 -
Vvi1g0841 489 PANTHER PRE-MRNA SPLICING FACTOR PRP31 7 487 IPR027105 GO:0000244|GO:0000398|GO:0046540
Vvi1g0841 489 SMART NOSIC_2 100 152 IPR012976 -
Vvi1g0841 489 MobiDBLite consensus disorder prediction 334 366 - -
Vvi1g0841 489 SUPERFAMILY Nop domain 93 339 IPR036070 -
Vvi1g0841 489 Pfam snoRNA binding domain, fibrillarin 108 336 IPR002687 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0841 Vvi-Chr1 8867934 8876701 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0841 K12844 - vvi:100262218 908.286