Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0838 ATGGCTCTTCTGCAACAGAAGTTACTCGCTTCATTGCTTGTAATCTTCGGCATTAGTGCTGCTGTTTCTGCCGGCAATGGGCATGATGCAGCTCCAAACGTCACAAGATTGACGGACCTGTTTGGTCATCTCACTTTCAATCATGGCTTTACTGAATTTTTTGGAGGCTCAAATATCCAGCCCATCAATAATGGCTCCTATGCCAATCTTATTCTCAATAAATCCTCCGGAAGTGGATTGGTGTCACAGAGCAAGTATTACTATGGATTCTTCAGTGCTGCAATAAAGCTGCCCTCTGGTTACACCTCTGGAGTTGTGGTAGCCTTTTATATGTCTAATGCAGATCTTTTCCCTCACAACCATGATGAGATCGACATTGAATTGCTCGGTCATGAGAAGAGAAAAGACTGGGTGCTGCAGACAAATATGTATGGCAATGGCAGTGTGAGCACTGGAAGAGAAGAGAAATTTCGACTATGGTTCGACCCAACTGAGCAGTACCATCATTACAGCTTCATCTGGAATAGACATCATATAGTGTTTCTGGTAGACAATGTACCAGTAAGAGAGATTCTTTACAATGATGCCATTTCCTCTGTTTACCCATCAAAGCCCATGTCGGTTTATGCAACAATATGGGATGGATCAGAGTGGGCAACTCATGGAGGAAAATACCCGGTTGACTATAAGTATGCCCCATTTGTGGTTTCATTTGGAGAAATGGAAATGGATGGCTGCACATTCGATCCAAAAAAGAAAGGTGTTTCATGTTCTAAAGGCAGTGTTTCAAGCAGGGACCCGGTTGATGGAGAAGAGTTTGCTAAGCTATCAGAGCAACAGAGAATGGGGATGGAGTGGGCAAGAAAGAAGCTCATGTTCTACTCATACTGCAAAGATTCTTCAAGATTTAAAGTCCTCCCACCTGAGTGCAAAGCAAAATGA 942 0.4321 MALLQQKLLASLLVIFGISAAVSAGNGHDAAPNVTRLTDLFGHLTFNHGFTEFFGGSNIQPINNGSYANLILNKSSGSGLVSQSKYYYGFFSAAIKLPSGYTSGVVVAFYMSNADLFPHNHDEIDIELLGHEKRKDWVLQTNMYGNGSVSTGREEKFRLWFDPTEQYHHYSFIWNRHHIVFLVDNVPVREILYNDAISSVYPSKPMSVYATIWDGSEWATHGGKYPVDYKYAPFVVSFGEMEMDGCTFDPKKKGVSCSKGSVSSRDPVDGEEFAKLSEQQRMGMEWARKKLMFYSYCKDSSRFKVLPPECKAK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0838 313 Gene3D - 30 310 - -
Vvi1g0838 313 SUPERFAMILY Concanavalin A-like lectins/glucanases 45 312 IPR013320 -
Vvi1g0838 313 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 45 310 IPR044791 GO:0004553
Vvi1g0838 313 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 28 238 IPR000757 GO:0004553|GO:0005975
Vvi1g0838 313 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 274 310 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vvi1g0838 313 Pfam Glycosyl hydrolases family 16 62 230 IPR000757 GO:0004553|GO:0005975
Vvi1g0838 313 PIRSF EndGlu_transf 9 313 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vvi1g0838 313 CDD GH16_XET 41 310 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0838 Vvi-Chr1 8845200 8846421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0838 7 310 Glycoside Hydrolase AT1G10550 58.065 3.53e-133 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0838 K08235 - vvi:100245071 640.958