Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0832 ATGAATTCGATGCTATTTTCCTTATGTTTCCTTCAGGTTATCTATTCAGCTGGTGATAGTTGCCATGCCTGTGCTGCCATCTCTAATATGCTTGTAATGTGTGGAGTTCCTCGCTATCCCTCTCCTTATGCAACTATGGTTCGTCCTGCATTTCCTCCTCGTCCACCAGGAGCAATTGGGATGCTTCCTGCACTGTCACGCCCTCCTGTTCCAGGGATGCCAGGAGTTCGTCCAATTATGCCTCCTGTTGTTAGACCAGCTATTGTCCCTGTTGCTGCACCAACAGAGAAACCACAAACCACGGTTTATGTTGGCAAAATAGCATCAACAGTGGAAAATGATTTTATTCTCTCTCTCCTTCAAGTTTGTGGACCTGTCAAGAGTTGGAAACATGCTCAATATCCCATAGATGGAACTCCCAGAGGCTTGGGATTCTGTGAATTTGAGTCTCCTGAAGGGGTTCTCCGTGCTTTACGCCTGCTGACTAAATTCAATGTTGATGGGCAGGAACTGGTGTTAAATGTTAATCAAGCAACAAGAGAATATCTAGAGCGGTATGTTGAAAAGAAAACTGAAAACTCAAAGAAACCACAAGAATCTGACATTGAAGGATCTGAGAAAGAGCAAGAAAGTGTACCAGGTGTTGAGCAGAATGAAATTCTAAAGCCTTCTTTAGAGGACTCAAAGAAGGATGGAAATGAGTTGGTGAACAAAGAAAATCAAGACAATGCTTCCTTTGGGATTGTGACTGATGAAGATAGAGAAGCTGATCGTGAGGCTTTGGAGAAGCTTACGAGTATGATGGAAGAGAGGATAAAGACAAAACCACTTCCTCCCCCACCCGCACAAGGGGCTGCAGATGGTTCTGAAAACACAAACTCAGAACTGCCTACTAAGTCAAGAGATTCAGATGTGGATGTAATGAGAAATGATGCAGCAGAAGATGATGAAACTACTAGTGAAAACAAACCTAAAAGTGATCAGGAGAGGCTTGAAAGAAGTTCACCTGACAGGAGTAGAAGATATGACAGGAGGAGCAGAGAGAGGGACAGAGACCGGGAGCTAAAACGGGAAAAGGAACGGGAATTTGACAGACTTGAGAGAGAAAGGGAGCGAGAACGAGTTAGGAGAGAGAAGGAGCGAGAGATAAAAATTGAGAGGGCTGAAAATTTATATAGGGAGCGTGTCAAGGAGTGGGAGTATAGAGAAAGAGAGAAAGAGTATCAGCGACAGCATGAAAAGGAGAGGGAAAAAGAAAGGGAACGGGAGCGGAGGAGGGAAATCTCAAATCAGGAACGTGACAATGACGAAGATGATTCCAGAAAAAGGAGGCGCAGGAGTAGTGAGGTAGAAGAGAAGAGAAAGAAGAGGCAAAGAGAAAAGGAGGAAGACTTGGCTGACAGATTAAAAGAGGTGGAAGAAATTGCTGAGACCAATAGGAGGGCAAGTGAGGAGGAGCAACAGCAGCAGCAGGAGCAACAAAACAATGCAGTCAAGCTTTTGGCTCTTCATGCAACTACCGGAAGTGAAAAAGAAGTTCTGACTGATGAAACTGATGCACAAAATAAAGATAAAGCTGTTGAACAGGCTTATGAGGGTGATTCAAGTCATCAGAACCATATTGGTGATGGAATATTACAAAACGGCACTGGAGATGAATCGGCCATGGCATCGCTTGCTGCATCAGATGTGCGGCAGAGTAGCAATCTCCCTGCCAGAAAATTGGGTTTTGGTCTAGTTGGTTCTGGAAAGCGAACTGCTGTCCTGTCTGTTTTTCATGAGGAGGAGGATGATGATGCACATAAGGAGAAAAAGATGAGACCTCTGGTTCCCATTGATTATTCGACTGAAGAATTGCAGGCTGTCCAACCTACCATTTCTGGGCCATCACCATCAAATTTGGTTGCAGCAGCAGAATTTGCTAAGCGCATCACCAATGTTAAAGATGACAAGTCTGATATAGAGAAAGAAAGAAATAGACGTGCTTATGATAGGTCAAGCCACCGTGATAGGAATGATGAGGATATTAATCGTGCCAGAGATGAGAACAGAGAGAAGTTTCTTGATCGGGACAGGGATCGAGAACATGGACCAGAAAAATTGAGGACTCCAGATAATAAGAAGCTTTTAGATGCCAAACAATTGATTGATATGATCCCTAAGACTAAGGAGGAGTTATTCTCATATGAGATAAATTGGGGCGTGTATGATAAGCATGAGCTACATGAGAGAATGAGGCCTTGGATCTCAAAGAAGATTACAGAGTTTTTAGGAGAGGAAGAAGCTACGCTTGTGGATTACATTGTATCCAGCACTCAAGAACATGTTAAGGCATCCCAAATGCTGGAGCTACTTCAATCCATCTTAGATGATGAAGCAGAAATGTTTGTGCTCAAGATGTGGAGGATGCTTATCTTTGAAATTAAGAAAGTAGAGACAGGTCTCTCTTTGAGGTCAAAAACTTGA 2466 0.4339 MNSMLFSLCFLQVIYSAGDSCHACAAISNMLVMCGVPRYPSPYATMVRPAFPPRPPGAIGMLPALSRPPVPGMPGVRPIMPPVVRPAIVPVAAPTEKPQTTVYVGKIASTVENDFILSLLQVCGPVKSWKHAQYPIDGTPRGLGFCEFESPEGVLRALRLLTKFNVDGQELVLNVNQATREYLERYVEKKTENSKKPQESDIEGSEKEQESVPGVEQNEILKPSLEDSKKDGNELVNKENQDNASFGIVTDEDREADREALEKLTSMMEERIKTKPLPPPPAQGAADGSENTNSELPTKSRDSDVDVMRNDAAEDDETTSENKPKSDQERLERSSPDRSRRYDRRSRERDRDRELKREKEREFDRLERERERERVRREKEREIKIERAENLYRERVKEWEYREREKEYQRQHEKEREKERERERRREISNQERDNDEDDSRKRRRRSSEVEEKRKKRQREKEEDLADRLKEVEEIAETNRRASEEEQQQQQEQQNNAVKLLALHATTGSEKEVLTDETDAQNKDKAVEQAYEGDSSHQNHIGDGILQNGTGDESAMASLAASDVRQSSNLPARKLGFGLVGSGKRTAVLSVFHEEEDDDAHKEKKMRPLVPIDYSTEELQAVQPTISGPSPSNLVAAAEFAKRITNVKDDKSDIEKERNRRAYDRSSHRDRNDEDINRARDENREKFLDRDRDREHGPEKLRTPDNKKLLDAKQLIDMIPKTKEELFSYEINWGVYDKHELHERMRPWISKKITEFLGEEEATLVDYIVSSTQEHVKASQMLELLQSILDDEAEMFVLKMWRMLIFEIKKVETGLSLRSKT* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0832 821 MobiDBLite consensus disorder prediction 488 502 - -
Vvi1g0832 821 Gene3D PWI domain 701 816 - -
Vvi1g0832 821 SMART pwi_2 737 810 IPR002483 GO:0006397
Vvi1g0832 821 ProSiteProfiles PWI domain profile. 724 821 IPR002483 GO:0006397
Vvi1g0832 821 Coils Coil 349 383 - -
Vvi1g0832 821 CDD RRM_RBM25 100 183 IPR034268 -
Vvi1g0832 821 MobiDBLite consensus disorder prediction 189 213 - -
Vvi1g0832 821 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 31 820 - -
Vvi1g0832 821 MobiDBLite consensus disorder prediction 403 487 - -
Vvi1g0832 821 Coils Coil 401 434 - -
Vvi1g0832 821 Gene3D - 93 210 IPR012677 -
Vvi1g0832 821 SUPERFAMILY PWI domain 743 808 IPR036483 GO:0006397
Vvi1g0832 821 MobiDBLite consensus disorder prediction 297 379 - -
Vvi1g0832 821 MobiDBLite consensus disorder prediction 403 552 - -
Vvi1g0832 821 MobiDBLite consensus disorder prediction 651 706 - -
Vvi1g0832 821 Coils Coil 452 495 - -
Vvi1g0832 821 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 180 IPR000504 GO:0003723
Vvi1g0832 821 FunFam RNA Binding Motif protein homolog 700 816 - -
Vvi1g0832 821 MobiDBLite consensus disorder prediction 222 237 - -
Vvi1g0832 821 MobiDBLite consensus disorder prediction 532 552 - -
Vvi1g0832 821 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 171 IPR000504 GO:0003723
Vvi1g0832 821 MobiDBLite consensus disorder prediction 510 531 - -
Vvi1g0832 821 MobiDBLite consensus disorder prediction 189 379 - -
Vvi1g0832 821 Pfam PWI domain 744 807 IPR002483 GO:0006397
Vvi1g0832 821 MobiDBLite consensus disorder prediction 248 270 - -
Vvi1g0832 821 SMART rrm1_1 101 174 IPR000504 GO:0003723
Vvi1g0832 821 SUPERFAMILY RNA-binding domain, RBD 56 174 IPR035979 GO:0003676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0832 K12822 - vvi:100263874 1248.42