Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0828 ATGGGAGCCTTGTGTAACCATGATAAGCTCTCAAGCTTCACGTCCGCCCACGACCGCAGATTCTCCAAGCACGTTCACGACAACGTTCACGGCAACATCTATCTCGATCCGCTCTTTATGAAGTTTATTGACACTGAAGAGTTCCAGAGGCAAGGATTGGAGCTTGGAATTGACCCATTTGATATACAGACAGTAAAACTTGCTGGGCTACTGCATGATGTGGGCCATGGACCATTCAGCCACACGTTTGAGCAGGCATTTCTTCCCCGGGTTCTTAATGGCTCCAAATGGTTTGATTACATTGTTCGTGATTCCAGGGCTTGTGGTTTAGGTTGCAATTTTGAGTTTCGTAGGTTATTGGAGACGATGCGAGTAATAGATGATGAGATATGCTATCGTGCTAAGGAATATCTTACAATCCACAAGTTATTTGCCACTCGTGCTGATCTGCATCGAACAGTCTATATGCATGCAAAAGTAAAGGCAATAGAGCTCATGGTGATAGATGCACTGTTAAAAGCAAATGATCATCTTAAGATTTCATCCTTCATCGATCAACCAGCAGAATATTGGAAGTTCTGCAATGAATTCTCTGTTCCAAAGGATAGGCTGGAGCACTTCAAAGACATCACTCCCCAAGATATTATTTGTTCTCAGCAGGATTTTGAGAGTGATGAGAAGTTCCCCATACAAGATGATCGCATCAGTCACTTGCTGCCTGCAGGTTACGAAGATAGAATTGTGAGGGTGTACTCTAAAAAGCCTGAACTGGTGGAAGCAGTTTCTGAGGCCTTTGAAAATTTTCAGCTAAAGACATATAGAATGAAAGCCCAAGTACATGACACACCTGAGAAGAAGAAACGCAGAAGTTTCCAGATTTGGAGATGA 888 0.4313 MGALCNHDKLSSFTSAHDRRFSKHVHDNVHGNIYLDPLFMKFIDTEEFQRQGLELGIDPFDIQTVKLAGLLHDVGHGPFSHTFEQAFLPRVLNGSKWFDYIVRDSRACGLGCNFEFRRLLETMRVIDDEICYRAKEYLTIHKLFATRADLHRTVYMHAKVKAIELMVIDALLKANDHLKISSFIDQPAEYWKFCNEFSVPKDRLEHFKDITPQDIICSQQDFESDEKFPIQDDRISHLLPAGYEDRIVRVYSKKPELVEAVSEAFENFQLKTYRMKAQVHDTPEKKKRRSFQIWR* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0828 295 SUPERFAMILY HD-domain/PDEase-like 14 279 - -
Vvi1g0828 295 Gene3D - 200 276 - -
Vvi1g0828 295 Pfam HD domain 58 89 IPR006674 -
Vvi1g0828 295 Gene3D Hypothetical protein af1432 53 97 - -
Vvi1g0828 295 PANTHER DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE 51 97 - -
Vvi1g0828 295 CDD HDc 52 83 IPR003607 -
Vvi1g0828 295 Gene3D Hypothetical protein af1432 15 52 - -
Vvi1g0828 295 Gene3D Hypothetical protein af1432 98 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0828 Vvi-Chr1 8704047 8710492 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0828 K22544 - vvi:100267261 359.377