Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0825 ATGGAGGCCATGTGGATGAGGCGAGTGCCAGTGGGTTTGAAACCTTCAATCCCTTTCTCTGCCCTTATTCTTCCCATCCCCTTCCCTCATCTGAAACCACTCCTCTCTCTCCATCATCGCTCGCTCTCAATTGCCGCTTCTTCTTCAACGATTCCAGTTTATTCAACTTATCATCATCATCATCATCCTTCCTCCGCTGCCGACGAGAATGGGAATCCAATCAAGGGCTCAAAGGTGCTTCTCAAAGGAATGAGATATTTTGAACTTCAAAATTGGGTTCAATCACATGGGTACAGGCCCGGGCAGGCGTTAATGCTATGGAAGCGGCTTTACGGAAACAACATTTGGGCACATTGTATCGATGAATTAGAAGGTTTGAACAAAGATTTCAAGAGCATGTTGAGTGAACATGCTGAATTCAAGGCATTGACCTTGAAAGACAGTATCAAAGCCTCTGATGGAACTAGGAAGATTTTATTCACGTTGGATGATGGGCTAGTGATAGAAACAGTCATAATACCTTGTGATAGGGGCAGGAACACTGTGTGTGTTTCAAGTCAAGTGGGTTGTGCCATGAATTGTCAGTTCTGCTATACTGGCAGGATGGGACTAACGAGACACCTAACTGCAGCTGAGATAGTAGAACAGGCTGTATATGCGCGACGTCTATTCTCAAGTGAAGTCGGTTCCATTACGAATGTTGTATTTATGGGGATGGGCGAACCATTTCATAACATCGAAAGTGTCATAAAAGCTGCAGACATAATGGTGCATGATCAAGGCCTTCATTTCAGTCCTCGCAAAGTTACTGTTTCAACCAGTGGGCTCGTTCCTCAGCTGAAACATTTCCTCCGTGAATCTAATTGTGCTTTAGCAGTTAGCTTGAATGCGACAACCGATGAGGTAAGAAACTGGGTAATGCCAATTAACCGGAAGTATAACTTAAGCTTGCTTCTTCAAACCCTTCGAGAAGAACTTCGCTCCAAACATAACTACAAAGTTCTATTTGAATATGTGATGCTTGCAGGAGTTAACGACAGCCTTGAGGATGCAAGGAGGCTCATTGATCTTGTTCAGGGCATTCCTTGCAAGGTCAATCTTATATCGTTTAATCCACATTGCGGATCCCAGTTTAAACCAACCAGTGAAGAGAAGATAATTGAGTTCCGAAATATTCTGGCGGAAGCAGGGTGTATTGTTTTCTTGCGACCCAGTAGAGGGGATGACCAAATGGCTGCCTGTGGTCAACTTGGGAAGCCTGGCCAAGTTCAGGCTCCCTTGCTTCGGGTGCCTGCTAAATTCCAGTCTGCCCTGACCTAG 1320 0.45 MEAMWMRRVPVGLKPSIPFSALILPIPFPHLKPLLSLHHRSLSIAASSSTIPVYSTYHHHHHPSSAADENGNPIKGSKVLLKGMRYFELQNWVQSHGYRPGQALMLWKRLYGNNIWAHCIDELEGLNKDFKSMLSEHAEFKALTLKDSIKASDGTRKILFTLDDGLVIETVIIPCDRGRNTVCVSSQVGCAMNCQFCYTGRMGLTRHLTAAEIVEQAVYARRLFSSEVGSITNVVFMGMGEPFHNIESVIKAADIMVHDQGLHFSPRKVTVSTSGLVPQLKHFLRESNCALAVSLNATTDEVRNWVMPINRKYNLSLLLQTLREELRSKHNYKVLFEYVMLAGVNDSLEDARRLIDLVQGIPCKVNLISFNPHCGSQFKPTSEEKIIEFRNILAEAGCIVFLRPSRGDDQMAACGQLGKPGQVQAPLLRVPAKFQSALT* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0825 439 NCBIfam 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 81 418 IPR027492 GO:0030488|GO:0070475
Vvi1g0825 439 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 78 423 IPR027492 GO:0030488|GO:0070475
Vvi1g0825 439 ProSiteProfiles Radical SAM core domain profile. 176 409 IPR007197 GO:0003824|GO:0051536
Vvi1g0825 439 FunFam Radical SAM superfamily protein 78 141 - -
Vvi1g0825 439 SFLD adenosine C2 methyltransferase (RlmN-like) 78 419 IPR004383 GO:0006364|GO:0008173
Vvi1g0825 439 Pfam Radical SAM superfamily 185 354 IPR007197 GO:0003824|GO:0051536
Vvi1g0825 439 Gene3D - 78 141 - -
Vvi1g0825 439 Gene3D Aldolase class I 143 424 IPR013785 -
Vvi1g0825 439 FunFam Dual-specificity RNA methyltransferase RlmN 143 422 - -
Vvi1g0825 439 CDD Radical_SAM 189 389 - -
Vvi1g0825 439 SUPERFAMILY Radical SAM enzymes 179 396 - -
Vvi1g0825 439 SFLD methyltransferase (Class A) 78 419 - -
Vvi1g0825 439 PANTHER 23S RRNA METHYLTRANSFERASE 60 424 IPR040072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0825 Vvi-Chr1 8677962 8680594 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0825 K06941 - vvi:104880034 874.774