Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0824 | ATGGATCTTCTTGCCAAGAGTTACACGGCAGATGATGACGACGGGCCACAGCATGAAGCAGAAGACCAAAACCTTGACAATTCATCGCCGGATTCTTCCCCAACTCGAATCGCTCTCCCCTCCAAATCCTCCGCCCCCAAGGTCGACGACACCACGCTCGCTCTCGCGATCGCCAATACAAATGACAAACCCATTGACCCTATCCAACACGTCGTCCCCTTCAATCCCACCTACGACCAGCTCTGGGCTCCCATCTATGGCCCCGCCCACCCATACGCCAAAGACGGCATCGCTCAAGGCATGCGCAACCACAAGCTAGGGTTCGTGGAAAACGCCGCTATCGAGCCTTTCATTTTCGACGAACAATATAACACGTTTCACAAGTACGGTTACGCCGCGGACCCGTCTGCTTCGGCGGGGAATAATTATGTTGGGGATCTGGAGGCGTTGGAGAAAAACGACGGTATTTCAGTGTATAATATTCCTCAGCACGAGCAAAAGAAGCGGAAGATTGAGAAAAAGAAGGAATCGGAGAGCGAGGAGAATGAGGATGTTGATGTGGAGGAGGTTCAGAATCCCGCTACTGATACGTGGTTGTTGAAAAATAAGAAGAGTCCGTGGGCGGGGAAGAAGGAAGGGTTGCAGACGGAATTGACGGAGGAACAGAAGAAGTACGCCGAGGAGTACGCAAAGAAGAAGGGTGAGGAGAAAGGGGCAGCCGAAAAGGGCGAATTTGTTACAGATAAGAGTACATTTCATGGGAAAGAGGAGAGGGATTATCAGGGTAGGTCTTGGATTGCACCACCCAAGGATGCTAAGGCTACAAACGATCATTGTTATATACCAAAGAGATTGGTGCATACTTGGAGTGGACACACGAAGGGTGTGTCTGCAATTCGGTTCTTCCCCAAGCATGGGCATTTGATTCTCTCAGCTGGGATGGATACCAAGGTAAAGATTTGGGATGTGTTCAATTCAGGGAAGTGTATGAGGACTTATATGGGTCACTCAAAGGCAGTTCGAGATATTTCGTTTTGTAATGATGGGACTAAGTTTTTGACTGCTGGGTATGACAAGAATATCAAGTACTGGGACACAGAAACTGGACAGGTGATATCCACCTTCTCAACTGGGAAGATCCCTTATGTTGTTAAGCTGAATCCAGATGATGATAAGCAGAATATCCTATTAGCAGGGATGAGTGATAAAAAGATTGTTCAGTGGGATATGAATACAGGGCAAATTACACAAGAGTATGATCAACATTTGGGAGCGGTAAACACCATTACATTTGTAGACAACAATAGGAGATTCGTCACTTCTAGTGATGACAAATCTCTTCGTGTTTGGGAATTTGGGATTCCTGTGGTTATAAAGTATATCAGTGAACCTCATATGCACTCCATGCCATCAATTTCTCTTCACCCAAATACAAATTGGCTTGCGGCACAGAGTTTGGACAATCAGATTCTTATTTATAGCACTAGGGAGAGGTTTCAGCTCAATAAAAAGAAGAGGTTTGCTGGTCACATTGCGGCTGGCTATGCTTGCCAAGTCAATTTCTCACCAGATGGACGGTTTGTCATGTCTGGAGATGGTGAAGGTAAATGCTGGTTTTGGGACTGGAAGAGTTGCAAAGTCTTCAGAACACTCAAGTGTCATGAAGGGGTATGCATCGGGTGTGAGTGGCATCCTTTGGAACAAAGTAAAGTAGCAACATGTGGCTGGGATGGCTTGATTAAGTACTGGGACTAA | 1755 | 0.4655 | MDLLAKSYTADDDDGPQHEAEDQNLDNSSPDSSPTRIALPSKSSAPKVDDTTLALAIANTNDKPIDPIQHVVPFNPTYDQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVENAAIEPFIFDEQYNTFHKYGYAADPSASAGNNYVGDLEALEKNDGISVYNIPQHEQKKRKIEKKKESESEENEDVDVEEVQNPATDTWLLKNKKSPWAGKKEGLQTELTEEQKKYAEEYAKKKGEEKGAAEKGEFVTDKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIAAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD* | 585 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0824 | 584 | Coils | Coil | 161 | 188 | - | - | |
| Vvi1g0824 | 584 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 551 | 584 | - | - | |
| Vvi1g0824 | 584 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Vvi1g0824 | 584 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 333 | 370 | - | - | |
| Vvi1g0824 | 584 | PANTHER | PRE-MRNA-PROCESSING FACTOR 17 | 1 | 584 | IPR032847 | GO:0000398|GO:0071013 | |
| Vvi1g0824 | 584 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 309 | 323 | IPR019775 | - | |
| Vvi1g0824 | 584 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 551 | 584 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | Pfam | WD domain, G-beta repeat | 327 | 365 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | Pfam | WD domain, G-beta repeat | 284 | 322 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | Pfam | WD domain, G-beta repeat | 506 | 541 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | Pfam | WD domain, G-beta repeat | 547 | 584 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | Pfam | WD domain, G-beta repeat | 413 | 450 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 333 | 374 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | MobiDBLite | consensus disorder prediction | 26 | 47 | - | - | |
| Vvi1g0824 | 584 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 419 | 451 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 419 | 451 | - | - | |
| Vvi1g0824 | 584 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 289 | 323 | - | - | |
| Vvi1g0824 | 584 | Coils | Coil | 211 | 231 | - | - | |
| Vvi1g0824 | 584 | SUPERFAMILY | WD40 repeat-like | 280 | 584 | IPR036322 | GO:0005515 | |
| Vvi1g0824 | 584 | CDD | WD40 | 285 | 584 | - | - | |
| Vvi1g0824 | 584 | FunFam | Pre-mRNA-processing factor 17, putative | 269 | 584 | - | - | |
| Vvi1g0824 | 584 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 289 | 323 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | MobiDBLite | consensus disorder prediction | 164 | 180 | - | - | |
| Vvi1g0824 | 584 | MobiDBLite | consensus disorder prediction | 164 | 190 | - | - | |
| Vvi1g0824 | 584 | SMART | WD40_4 | 282 | 322 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | SMART | WD40_4 | 412 | 451 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | SMART | WD40_4 | 500 | 541 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | SMART | WD40_4 | 368 | 409 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | SMART | WD40_4 | 544 | 584 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | SMART | WD40_4 | 455 | 494 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | SMART | WD40_4 | 326 | 365 | IPR001680 | GO:0005515 | |
| Vvi1g0824 | 584 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Vvi1g0824 | 584 | PRINTS | G protein beta WD-40 repeat signature | 438 | 452 | IPR020472 | - | |
| Vvi1g0824 | 584 | PRINTS | G protein beta WD-40 repeat signature | 309 | 323 | IPR020472 | - | |
| Vvi1g0824 | 584 | PRINTS | G protein beta WD-40 repeat signature | 352 | 366 | IPR020472 | - | |
| Vvi1g0824 | 584 | Gene3D | - | 269 | 584 | IPR015943 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0824 | 395 | 584 | Miscellaneous Gene Families | AT5G08390 | 24.870 | 6.66e-14 | 73.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi1g0824 | K12816 | - | vvi:100260455 | 1153.66 |