Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0808 ATGCATAGACAACATAAGCTTTTGAGCCATCTCTTTCTCATTTTCTTATTCTCAGCTTCGTTTCCCAATGTTGCTTTGGGCGGAGCCGGTGAGGAATCGGGCAAACCGGTGGCTGGAGAAAACCCATTCACACCCAGAGCGTCTTTGCTTCGGTATTGGAATAAGCAGATCGGCAGTGGCTTGCCAAAGTCCACCTTTCTTCTCTCCAAGGCATCCCCATTGAGCGCGGTTGAGTCGGCCACCTTTACTAAACTTGCCGCTCAAAATGCGCTTTCCGACAATCTGCCGGCGTTCTGTAAGTCTGCGAACCTGCTCTGTTTTCCCGATTTGGGGCAGAGCTTGGAGAAGCATGACGCTAGTTCCAACTTCGCCGTGTATTCGAACAAGAATTTCACCAATTACGGAACGGATGGACTCGGGGGAACGGACGCCTTCACAAAATACTCGGAGGGGGTCAATCTTCCTGTCGACGCATTCAAGCGCTATAGCCGTGACTCCGTCGGCAACAATGATAAATTCGATAATTACGGCCGCGAGGGCAACGTCGTGGATCAGAGCTTCAGCGGCTACGGTGCCGGGGCTACCGGCGGCTCTGGAGAGTTCAAGAAGTACAACGAAGAGGTTAATGTTCCCAACCTTCGATTCAACTCCTACACAGACGATGGCAATGGCCGTCAACAATCATTCACGAGTTACACAAATGAGACCAATTCTGGAGATGAGTCCTTCAGTAGCTACGGCAAGAACGGCAACGGATCTCCGAACGAGTTCACGAGTTACGGCAGCAGCTCCAACGTCATCGGCTCCACGTTCACCGGCTACGGTGAAACCGGCAATGCCGCCAACGATACGTTCAAGAGCTACGGCTTTGACGGCAACGTGCCAGAGAACAACTTCAAGAAATACGGTGATGGTGGTAATGCGGGGACCGATACTTTCATAAGTTACAGAGATCAATCCAATGTAGGAGACGACTCCTTCAAATCCTACGCCAAGAATTCCAATTCCGCAGAGGTGGATTTCGTCAACTATGGGAAATCGTTCAACGAAGGTACAGACACTTTCGCTGGGTACGGCAAGGGAGCGACGAACCACAAAATTAATTTCAAGATCTACGGCGTCAACAACACATTCACAGACTACGCTAAAAAGGGCATCTCCTTTTCAAGATACACCAACAAAAGCTCTGAAACAATGACTTCCATGGCGGTCAGTGGCAGTTCAGTAAATAGGTGGGTTGAGCCGGGTAAATTCTTCCGCGAGTCGATGCTGAAGAAAGGGACTGTGATGCCAATGCCGGACATTAGGGATAAAATGCCCAAAAGGTCGTTTTTGCCCCGCACTATTTCCTCCAAATTTCCGTTTTCAACCTCCAAACTTGAGGAGATGAAGAAAATATTCCATGCCGCGGATAACTCAAGCATGGAGCACATGTTCACAGAGGCATTAGATGACTGCGAGAGAGCACCCAGCAAAGGCGAGACCAAGCGCTGCGTCCCCTCCATCGAGGACATGATCGACTTCGCCACCACCGTCCTCGGCCGCAACGTTGTGGTTCGCACCACCCAATCCGTCGAAGGGTCAAAACAAAACTTAATGATCGGGTCGGTCAAAGGGATCAACGGTGGACAAGTCACCAAATCGGTGTCCTGCCACCAGAGCCTGTTCCCTTATCTACTCTATTACTGCCACTCCGTTCCCAAGGTTCGGGTCTATGAAGCGGACCTCCTGGACCCGAAAACCAAAGCCAACGTTAACCATGGTGTTGCCATCTGTCACTTGGACACCTCCGATTGGAGCGCGGGTCATGGTGCATTCGTGGCATTGGGTTCGGGCCCTGGCCGGATTGAAGTTTGTCACTGGATTTTCGAGAATGATATGACCTGGACCATTGCAGACTGA 1902 0.5084 MHRQHKLLSHLFLIFLFSASFPNVALGGAGEESGKPVAGENPFTPRASLLRYWNKQIGSGLPKSTFLLSKASPLSAVESATFTKLAAQNALSDNLPAFCKSANLLCFPDLGQSLEKHDASSNFAVYSNKNFTNYGTDGLGGTDAFTKYSEGVNLPVDAFKRYSRDSVGNNDKFDNYGREGNVVDQSFSGYGAGATGGSGEFKKYNEEVNVPNLRFNSYTDDGNGRQQSFTSYTNETNSGDESFSSYGKNGNGSPNEFTSYGSSSNVIGSTFTGYGETGNAANDTFKSYGFDGNVPENNFKKYGDGGNAGTDTFISYRDQSNVGDDSFKSYAKNSNSAEVDFVNYGKSFNEGTDTFAGYGKGATNHKINFKIYGVNNTFTDYAKKGISFSRYTNKSSETMTSMAVSGSSVNRWVEPGKFFRESMLKKGTVMPMPDIRDKMPKRSFLPRTISSKFPFSTSKLEEMKKIFHAADNSSMEHMFTEALDDCERAPSKGETKRCVPSIEDMIDFATTVLGRNVVVRTTQSVEGSKQNLMIGSVKGINGGQVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDPKTKANVNHGVAICHLDTSDWSAGHGAFVALGSGPGRIEVCHWIFENDMTWTIAD* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0808 633 ProSiteProfiles BURP domain profile. 418 632 IPR004873 -
Vvi1g0808 633 SMART BURP_2 416 632 IPR004873 -
Vvi1g0808 633 MobiDBLite consensus disorder prediction 214 255 - -
Vvi1g0808 633 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 18 633 - -
Vvi1g0808 633 Pfam BURP domain 418 630 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0808 Vvi-Chr1 8251599 8253586 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0808 - - vvi:100258559 1266.52