Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0798 ATGGGGATAAGAAGAACAAGGTTAATGTTGGCTTCCCTGATTGTCATCATGGGAACTCTTTTGGGTTGCCCTGGTGCTGCAACCGCTAAAAGAGCTCCCACTGTTATCATTGTTGGAGCTGGCATGTCAGGGATTTCGGCTGCCAAAACATTGTCAGACGCTGGAATTAAGCGAATATTGATACTAGAAGCAACGAATAGGATAGGTGGACGCATGTACAAAGCAAACTTCTCGGGGGTGAGTGTGGAACTAGGGGCCAACTGGGTATCGGGAGTTGGGGGTCCACAAGTGAATCCCGTTTGGATTATGGCTAACAAGCTCCGACTCAAATCCTTCCTGTCTAATTTTCTGAACCTATCTTCCAACACCTATAAACCAGAGGGTGGAGTGTATGAGGAGTCAGTGGCAAGAAAGGCGTTTGAGGTGGCTGAGCAGGTGGTGGAATTTGGCACCAAGGTTTCCAAGGATTTAGCAGCACGCAAGCAACCAGATATTTCCATTTTGACATCTCAACGCCTCAAAAATTATTTTCCCAAAACACCCCTTGAGATGGTCATTGACTACTACCTCTGTGATTTTGAGAGTGCGGAGCCACCAAGAGCCACAAGCTTGCTGAACTCTGAGCCATCTTCTACATACTCCAACTTCGGTGAGGATTCTTACTTTGTCTCAGATCCAAGGGGTTATGAGAGTGTTGTTCATTATGTAGCACAGCAGTTTCTCACCACAAATGCAGCTGGACAAATCACTGATCCTCGTCTTCAACTTAAAAAGGTGGTGACTGAAATAAGCCGTTCCCCAAGGGGTGTGGCTGTCAAGACAGAGGATGGCTTGGTGCACAGAGCCGACTATGTCATTGTCTCTGTCAGTCTTGGTGTCCTTCAGAACGATCTTATCAAATTTCATCCTTCCTTGCCGCAATGGAAGATCCTTGCTTTGGACCAGTTCAATATGGCTATCTATACCAAAATATTCCTCAAGTTTCCTTACAAGTTTTGGCCGAGTGGCAATGGCACAGAATTCTTCTTGTATGCTCATGAAAAGCGTGGTTACTACCCTTTTTGGCAGCATCTAGAAAGGGAGTTTCCGGGAGAGAATGTTCTTTTAGTAACAGTTACTGATGATGAATCAAGAAGATTGGAGCAGCAATCAGATTCTGAGACCAAGGCAGAGATCATGGCTGTCTTGAGAAACATGTTTGGGAAACAAATTCCAGAAGCTACAGATATATTAGTCCCTAGATGGTTGTCAAACAGATTCTTCAAAGGCAGTTACTCCAACTGGCCAATTGGAGTTAGTCATCACCAATTCAATCAGATAAAGGCACCAGTTGGAAAGGTTTATTTCACTGGCGAGCACACTAGCGCAGCCTACTATGGTTATGTTCATGGAGCCTACTTTGCAGGTTTTTTGCTCTTCGTAATTGGTCTATAA 1434 0.4484 MGIRRTRLMLASLIVIMGTLLGCPGAATAKRAPTVIIVGAGMSGISAAKTLSDAGIKRILILEATNRIGGRMYKANFSGVSVELGANWVSGVGGPQVNPVWIMANKLRLKSFLSNFLNLSSNTYKPEGGVYEESVARKAFEVAEQVVEFGTKVSKDLAARKQPDISILTSQRLKNYFPKTPLEMVIDYYLCDFESAEPPRATSLLNSEPSSTYSNFGEDSYFVSDPRGYESVVHYVAQQFLTTNAAGQITDPRLQLKKVVTEISRSPRGVAVKTEDGLVHRADYVIVSVSLGVLQNDLIKFHPSLPQWKILALDQFNMAIYTKIFLKFPYKFWPSGNGTEFFLYAHEKRGYYPFWQHLEREFPGENVLLVTVTDDESRRLEQQSDSETKAEIMAVLRNMFGKQIPEATDILVPRWLSNRFFKGSYSNWPIGVSHHQFNQIKAPVGKVYFTGEHTSAAYYGYVHGAYFAGFLLFVIGL* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0798 477 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Vvi1g0798 477 PRINTS Flavin-containing amine oxidase signature 427 449 IPR001613 GO:0016491
Vvi1g0798 477 PRINTS Flavin-containing amine oxidase signature 34 53 IPR001613 GO:0016491
Vvi1g0798 477 Pfam Flavin containing amine oxidoreductase 42 469 IPR002937 GO:0016491
Vvi1g0798 477 SUPERFAMILY FAD/NAD(P)-binding domain 32 470 IPR036188 -
Vvi1g0798 477 Gene3D - 115 433 - -
Vvi1g0798 477 PANTHER FLAVIN MONOAMINE OXIDASE 33 470 - -
Vvi1g0798 477 Gene3D - 35 470 IPR036188 -
Vvi1g0798 477 FunFam Polyamine oxidase 1 309 433 - -
Vvi1g0798 477 SUPERFAMILY FAD-linked reductases, C-terminal domain 318 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0798 Vvi-Chr1 8096480 8099812 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0798 K13366 - vvi:100244793 924.85