Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0794 ATGAGAAATCAGAGATTCAGGATTATCAATGAGGAAAAGGATGAGTTGGCATCTGTTTGTTCAGTGGATTCCAGCACTAGTTGCTCCCCATTTGAATCTGCTTGGCCCACCTCCTTTATGACCGCTAGTGAACATTGTATCACTGTGCATGCTGTTACAAAGGCTTCTCCTTCTCCTATAATCTACTGCACAGAGAATGCACATCATGATAAACATATTTCACATATCGAAGTTTCTGATTCAGAACCTGGACATTCAAAGTCATGCAGTGAGACAGCAGTATCCAAGAAACTGCAAGATGTACACATATCAGCACGGTTGATGGAGGATTTTCTTGAACTTGCTAGAGACAACACAAAGAATGATCTGGAGACTTGTGGGATTCTTGGTGCTTTCCTTAAAATGGGGACCTTCTATGTAACTACTCTGATAATACCCAAGCAGGAATCAACTTCCAACAGTTGTCAGGCTATAAAAGAGGAGGAGATTTTTGCCATACAAAATGAACACTCCCTTTTTCCTGTAGGATGGATCCATACACATCCTTCTCAGAGTTGTTTCATGTCATCAATAGATTTGCACACGCAATACTCATATCAGGTGATGGTGCCTGAGGCTTTTGCCATTGTCATGGCTCCAACTGATACCTCAAGGAGCTATGGCATATTCCGGCTGTCTGACCCAGTTGGAATGAGTGTTCTGAAAGACTGCCCAGAGGAGGGATTTCATCATCACAATGAACCAGCAGATGGGGGTCCCATTTATGAGCACTGCTCTAATATTTATATAAATTCAAATCTCAGATTTGAAATATTTGACTTGCGATGA 828 0.4167 MRNQRFRIINEEKDELASVCSVDSSTSCSPFESAWPTSFMTASEHCITVHAVTKASPSPIIYCTENAHHDKHISHIEVSDSEPGHSKSCSETAVSKKLQDVHISARLMEDFLELARDNTKNDLETCGILGAFLKMGTFYVTTLIIPKQESTSNSCQAIKEEEIFAIQNEHSLFPVGWIHTHPSQSCFMSSIDLHTQYSYQVMVPEAFAIVMAPTDTSRSYGIFRLSDPVGMSVLKDCPEEGFHHHNEPADGGPIYEHCSNIYINSNLRFEIFDLR* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0794 275 PANTHER AMSH-LIKE PROTEASE 13 275 - -
Vvi1g0794 275 CDD MPN_AMSH_like 98 275 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Vvi1g0794 275 FunFam AMSH-like ubiquitin thioesterase 2 81 275 - -
Vvi1g0794 275 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 97 204 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi1g0794 275 Gene3D Cytidine Deaminase, domain 2 79 275 - -
Vvi1g0794 275 SMART pad1_6 100 228 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi1g0794 275 ProSiteProfiles MPN domain profile. 101 229 IPR037518 -
Vvi1g0794 275 SUPERFAMILY JAB1/MPN domain 101 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0794 Vvi-Chr1 8038606 8044353 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0794 K11866 - vvi:100852697 557.755