Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0765 ATGAGTGGATTAAGCTTCAGAAGGCTCGCATTTATGCTTTTGTTTGCCTTCCTTGTATGGTCCTCTAGTACTGGGACCTGCCATGCTAGAAGAGGCAAGCACTGGAGGCATAGCAGAGCTGCCTCTGCTTCTCTGTCTAAGAAGAAAGCAAAGAGTCATGGCAGCGGCAGCCACCACCATGGTGGTAGTAAATCAAAACCCAAAGCTCCATCGCCTCCAAAACAGGAGGTCACTCCACCACCCCCAGAAAAGAAAGGATCAGAAACCTTTAATGTGTTAGATTTTGGTGCCAAGGGCGATGGAGATACTGATGACACAAAGGCCTTCCAATCTGCATGGGCCTCCGCTTGTAAAGTAGAGGCATCCACCATTGTGGTTCCATCTGAATACGTGTTCCTTGTGGGACCAATTTCATTCTCTGGCCCTTACTGTGAAGCAAACATTGTATTTCAGCTGGATGGCACGATTATCGCTCCAACAAATGCCAAAGCTTGGGGCTCTGGTCTGCTATGGTGGATCGAGTTCACAAAGCTGAGAGGAATCACGATTCGAGGGAACGGTGTCATTGATGGGAAGGGTTCAGTCTGGTGGCAGGATTCCCCATTTGATGATCCAGTAGATGATGAAGCAAAACTCATCATTCCATTAAACAGGACCGCAAAAGAAAACTCACCAATCCCAATAAACAGCAAGCTGGGTAGCAAAATGCCAAGCACCAAGCCAACAGCACTGAGGTTCTATGGAAGCTTTAACGTGACAGTCACGGGCATAACAATTCAAAACAGTCCCCAATGCCACCTCAAGTTTGACAACTGCATGGGAGTCTCAGTCTATGAAATGAGTGTCTCATCTCCTGGTGATAGCGTCAATACGGATGGGATACACCTACAGAACTCCAAGGACGTCCTAATTCACGCCACCAATCTCGCTTGTGGAGATGACTGTGTTTCTATACAAACTGGATGCTCAAATGTATACATACACAATGTGAACTGTGGGCCAGGACATGGGATCAGTATAGGAGGACTTGGAAGGGATGGCACCAAAGCCTGTGTCTCCAACATTACGGTCCGAGACATCATTATGCACAACACAATGAACGGTGTCAGGATCAAGACATGGCAGGGTGGCTCTGGGTCAGTGCAGGGAGTACTGTTCTCCAACATTCAAGTTTCTGAAGTGGAACTCCCAATTGTTATTGATCAATTCTATTGTGACAAGGGGAAATGCAAGAACCAAACATCGGCAGTGGCTCTATCTGGAATCACCTATGAGAAAATAAAAGGGACATACACAGTAAAACCTGTACACTTTGCCTGTAGTGACAACCTACCATGCATGGATGTAACTCTTACCGGCATTGAGCTAAAGCCATTGCAGGAGCGCTACCACATGTATGATCCCTTCTGCTGGCAAACTTTTGGGGAGCTGACCACTCCTACCGTCCCTCCAATTGATTGCTTACAGATTGGGAAGCCATCAAGCAACCGGATTCAATCTGATCATGATTCCTGTTGA 1518 0.4697 MSGLSFRRLAFMLLFAFLVWSSSTGTCHARRGKHWRHSRAASASLSKKKAKSHGSGSHHHGGSKSKPKAPSPPKQEVTPPPPEKKGSETFNVLDFGAKGDGDTDDTKAFQSAWASACKVEASTIVVPSEYVFLVGPISFSGPYCEANIVFQLDGTIIAPTNAKAWGSGLLWWIEFTKLRGITIRGNGVIDGKGSVWWQDSPFDDPVDDEAKLIIPLNRTAKENSPIPINSKLGSKMPSTKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCMGVSVYEMSVSSPGDSVNTDGIHLQNSKDVLIHATNLACGDDCVSIQTGCSNVYIHNVNCGPGHGISIGGLGRDGTKACVSNITVRDIIMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVELPIVIDQFYCDKGKCKNQTSAVALSGITYEKIKGTYTVKPVHFACSDNLPCMDVTLTGIELKPLQERYHMYDPFCWQTFGELTTPTVPPIDCLQIGKPSSNRIQSDHDSC* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0765 505 Gene3D - 77 494 IPR012334 -
Vvi1g0765 505 SUPERFAMILY Pectin lyase-like 87 502 IPR011050 -
Vvi1g0765 505 MobiDBLite consensus disorder prediction 29 65 - -
Vvi1g0765 505 Pfam Glycosyl hydrolases family 28 119 200 IPR000743 GO:0004650|GO:0005975
Vvi1g0765 505 Pfam Glycosyl hydrolases family 28 238 457 IPR000743 GO:0004650|GO:0005975
Vvi1g0765 505 SMART pbh1 322 342 IPR006626 -
Vvi1g0765 505 SMART pbh1 381 402 IPR006626 -
Vvi1g0765 505 SMART pbh1 178 199 IPR006626 -
Vvi1g0765 505 SMART pbh1 299 320 IPR006626 -
Vvi1g0765 505 SMART pbh1 249 298 IPR006626 -
Vvi1g0765 505 SMART pbh1 352 373 IPR006626 -
Vvi1g0765 505 PANTHER - 89 475 - -
Vvi1g0765 505 FunFam polygalacturonase At1g48100 78 490 - -
Vvi1g0765 505 MobiDBLite consensus disorder prediction 29 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0765 Vvi-Chr1 7736722 7740412 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0765 4 505 Glycoside Hydrolase AT1G60590 65.613 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0765 - - vvi:100241353 939.873